PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100028950011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 394aa    MW: 44802.2 Da    PI: 6.0565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100028950011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-07266291630
                                   HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                           HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                                    e+Er+RR+++N+++  Lr l+P+ +
  Ote100028950011|100028950011 266 LEAERKRRKKLNDRLYALRALVPNiS 291
                                   589********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-88143IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.026260313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-5262292No hitNo description
SuperFamilySSF474594.97E-7262292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-5265291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-6267291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MLVQSFTERL RPLVGIKGWD YIVLWKLSND HSEKVEIGGE EVGFESSSIS CRDVMFPHPR  60
GRSCDLLGLI PSSMVLDSGA HAQTLFSNSN QASWLNYSHN FDHSSLSEEA NGTRVLIPLP  120
LGLLELFVTK QVPEDEEMVD FIRVQCNMFL QQQTTTNSGT TDSFTSDPNT QKDPMNHISK  180
HKLELPNDIS IDRIHLCTSP LNSNAIFMEG GAFEFTPSME TTHNNKRGGS RWVDHNECEN  240
NRSDDSDDDD PRYRRRSGKG PQSKNLEAER KRRKKLNDRL YALRALVPNI SKPQVEVYQV  300
EGKELFVKVF CEHKAGGFVR LMEALNVLGL EVANVNTTRH TCLESTIFKL ERKNVDETVE  360
ADEVKESLLE LTRNPSENNY IHHNCQINAN HHHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085914.11e-112transcription factor ABORTED MICROSPORES
TrEMBLA0A4D9BFP41e-159A0A4D9BFP4_SALSN; Uncharacterized protein
STRINGPOPTR_0009s13860.13e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227