PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100028410101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 365aa MW: 42312.8 Da PI: 5.3839

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100028410101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.1	1.4e-13	76	139	2	71
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k + Ote100028410101\|100028410101 76 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKTEAN-----RPRPETRTGCPAMMKFRAV 139 9*************99997.66779**********98877.....************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-10	76	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
VNPLPVAATL ICDFLVPAIK LADEPTYDVE AEEFEIDGEC AMTEYVGQIG NVFQGDNPLP 60 PALGMEFESY DDVYYFYNCY AKQQGFGVRV SNTWYRKSKE RYRGKLSCSS AGFKKKTEAN 120 RPRPETRTGC PAMMKFRAVY HSLRAEEFEA AWENTVQSYG LKSHEWLQIL FEDRKRWVPV 180 YLKEIFFAGM FPVKENESLA SPFQEYLNQH TSLKEFLCSY DRAQQDIEQK ETLSDIGSNK 240 SSRLLKSRFF FELQLSKLYT KNVFEHFQDE VEGMHSCYNV RQSSREGLVA TFTVKEDIQV 300 EEKMKVTREF EVIYSTCNST DVLCACALFN FRGRKSRDRY KLASQSLEEM LAKVGIRDDH 360 PENVS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

VNPLPVAATL ICDFLVPAIK LADEPTYDVE AEEFEIDGEC AMTEYVGQIG NVFQGDNPLP  60
PALGMEFESY DDVYYFYNCY AKQQGFGVRV SNTWYRKSKE RYRGKLSCSS AGFKKKTEAN  120
RPRPETRTGC PAMMKFRAVY HSLRAEEFEA AWENTVQSYG LKSHEWLQIL FEDRKRWVPV  180
YLKEIFFAGM FPVKENESLA SPFQEYLNQH TSLKEFLCSY DRAQQDIEQK ETLSDIGSNK  240
SSRLLKSRFF FELQLSKLYT KNVFEHFQDE VEGMHSCYNV RQSSREGLVA TFTVKEDIQV  300
EEKMKVTREF EVIYSTCNST DVLCACALFN FRGRKSRDRY KLASQSLEEM LAKVGIRDDH  360
PENVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073405.1	1e-83	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_011073406.1	1e-83	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H5QT50	3e-99	A0A2H5QT50_CITUN; Uncharacterized protein (Fragment)
STRING	Migut.I00751.1.p	7e-80	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70