PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100028410021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 381aa MW: 44049.8 Da PI: 5.3839

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100028410021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43	1.5e-13	92	155	2	71
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k + Ote100028410021\|100028410021 92 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKTEAN-----RPRPETRTGCPAMMKFRAV 155 9*************99997.66779**********98877.....************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-10	92	154	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MVIVNSSQST MNSPFLVNPL PVAATLICDF LVPAIKLADE PTYDVEAEEF EIDGECAMTE 60 YVGQIGNVFQ GDNPLPPALG MEFESYDDVY YFYNCYAKQQ GFGVRVSNTW YRKSKERYRG 120 KLSCSSAGFK KKTEANRPRP ETRTGCPAMM KFRAVYHSLR AEEFEAAWEN TVQSYGLKSH 180 EWLQILFEDR KRWVPVYLKE IFFAGMFPVK ENESLASPFQ EYLNQHTSLK EFLCSYDRAQ 240 QDIEQKETLS DIGSNKSSRL LKSRFFFELQ LSKLYTKNVF EHFQDEVEGM HSCYNVRQSS 300 REGLVATFTV KEDIQVEEKM KVTREFEVIY STCNSTDVLC ACALFNFRGR KSRDRYKLAS 360 QSLEEMLAKV GIRDDHPENV S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MVIVNSSQST MNSPFLVNPL PVAATLICDF LVPAIKLADE PTYDVEAEEF EIDGECAMTE  60
YVGQIGNVFQ GDNPLPPALG MEFESYDDVY YFYNCYAKQQ GFGVRVSNTW YRKSKERYRG  120
KLSCSSAGFK KKTEANRPRP ETRTGCPAMM KFRAVYHSLR AEEFEAAWEN TVQSYGLKSH  180
EWLQILFEDR KRWVPVYLKE IFFAGMFPVK ENESLASPFQ EYLNQHTSLK EFLCSYDRAQ  240
QDIEQKETLS DIGSNKSSRL LKSRFFFELQ LSKLYTKNVF EHFQDEVEGM HSCYNVRQSS  300
REGLVATFTV KEDIQVEEKM KVTREFEVIY STCNSTDVLC ACALFNFRGR KSRDRYKLAS  360
QSLEEMLAKV GIRDDHPENV S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073405.1	2e-83	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_011073406.1	2e-83	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H5QT50	3e-99	A0A2H5QT50_CITUN; Uncharacterized protein (Fragment)
STRING	Migut.I00751.1.p	8e-80	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70