PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100027860091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 361aa MW: 40456.1 Da PI: 8.0236

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100027860091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.1e-10	77	105	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k +rr+++NReAAr+sR+RKka++++Le+ Ote100027860091\|100027860091 77 KIQRRLAQNREAARKSRLRKKAYVQQLET 105 789************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-4	73	133	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.4E-7	74	117	No hit	No description
PROSITE profile	PS50217	9.013	75	119	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-7	77	106	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-6	77	117	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-24	149	220	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MTTPTTQFAP SSRLGLYEPL HQISMWEDTF DGHISAGNGI SLIAEVEPKI DDKVEYGSDK 60 SLELAEENRA SRSISEKIQR RLAQNREAAR KSRLRKKAYV QQLETSRLKL AQLELELERA 120 RQQGMLMAVA NAHMGLCGTA NSDEQERKIS ELRNVLQTPI GDAELRLKVE SVLSHYCDLF 180 RMKRDAARVD AFSLVSGLWR TSVERFFLWI GGFKPSELIN QTANVETLKH SCMQAEDALT 240 QGMEKLQQTL AQTVSFLSPG HGSFCSQTAF ALENLESLES FINQVRQIVH PTLQVPAYIQ 300 HQTVLGRPSP TANSTAHVAY IDYATSSKRP GGVWRVFSAS AHVELALGGP LPTRVRMMVW 360 W

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MTTPTTQFAP SSRLGLYEPL HQISMWEDTF DGHISAGNGI SLIAEVEPKI DDKVEYGSDK  60
SLELAEENRA SRSISEKIQR RLAQNREAAR KSRLRKKAYV QQLETSRLKL AQLELELERA  120
RQQGMLMAVA NAHMGLCGTA NSDEQERKIS ELRNVLQTPI GDAELRLKVE SVLSHYCDLF  180
RMKRDAARVD AFSLVSGLWR TSVERFFLWI GGFKPSELIN QTANVETLKH SCMQAEDALT  240
QGMEKLQQTL AQTVSFLSPG HGSFCSQTAF ALENLESLES FINQVRQIVH PTLQVPAYIQ  300
HQTVLGRPSP TANSTAHVAY IDYATSSKRP GGVWRVFSAS AHVELALGGP LPTRVRMMVW  360
W

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097899.1	1e-156	transcription factor TGA4 isoform X2
Swissprot	Q39237	9e-91	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A4D8ZUK4	1e-164	A0A4D8ZUK4_SALSN; Transcription factor TGA
TrEMBL	A0A4D9B738	1e-164	A0A4D9B738_SALSN; Transcription factor TGA
STRING	Migut.C00214.1.p	1e-155	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]