PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100026180021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 631aa MW: 72110.3 Da PI: 8.9658

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100026180021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.1	2.5e-17	43	120	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwev 78 +fY+ YA++vGF++r+ + ++s+ +g++++r++vCskeg++++ +rtgC a + +gkw+v Ote100026180021\|100026180021 43 EFYSVYATQVGFKIRIGQLYRSRVDGSVISRRYVCSKEGFQTS--------------SRTGCPAXXXXXXXQkldSGKWVV 109 6*************************************976..............5899988776665779** PP FAR1 79 tkleleHnHel 89 +++++eHnHe+ Ote100026180021\|100026180021 110 ASIKKEHNHEV 120 *******97 PP
2	FAR1	67	4.8e-21	197	271	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 kfY++YA +vGF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l Ote100026180021\|100026180021 197 KFYHTYAANVGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRHESGRWVVDRL 263 6************************************9998..............4899**************** PP FAR1 82 eleHnHel 89 ++eHnH+l Ote100026180021\|100026180021 264 QKEHNHAL 271 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-13	43	120	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.6E-16	197	271	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
MTVRTKPVAL VFERSNGHHE NDGESKMGPY LGLEFNSAEE AQEFYSVYAT QVGFKIRIGQ 60 LYRSRVDGSV ISRRYVCSKE GFQTSSRTGC PAXXXXXXXQ KLDSGKWVVA SIKKEHNHEV 120 EASGEICPSR IQRKSIPTPR SSAGGASRTG IRSHEDDSPS GVVDTKRLKK EEMDAIGGPS 180 GEPQKGLEFN SANDAYKFYH TYAANVGFRI RIGQLFRSKH DGSITSRRFV CSKEGHQHPS 240 RVGCGAYMRI QRHESGRWVV DRLQKEHNHA LGTPLDPNCT VSIASKGYRE EGSNVLENLD 300 LVETNGGLSL VKRVRETWQI LAKEQENLGA LLSMDAKFKY EYETCIFQSQ TASEFDFAWN 360 LLMDKYHLTE NAWFKEMYQM RKSWVPLHIK GTFFAGIPVD GSLKCVFNTI LTPQTPLNEF 420 IVRYENALEK RYEEERKEDF NSFNMQTALH TKDPIEEQCR RLYTITMFKV FQKELLDCYN 480 YVGTKVNVEG AISRYLVQNC GNGDERNTVA FNASNLNIXX XXXXXXXXXX XXXHTLKVFQ 540 IMHIRELPSR YILHRWSKNA KYGIMRDSDS LGGSQNFKAL MRAEGISVGK TRTILKHSEE 600 IKGNWRMEMA LVTVLALELI GHFHYKFLNN M

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

MTVRTKPVAL VFERSNGHHE NDGESKMGPY LGLEFNSAEE AQEFYSVYAT QVGFKIRIGQ  60
LYRSRVDGSV ISRRYVCSKE GFQTSSRTGC PAXXXXXXXQ KLDSGKWVVA SIKKEHNHEV  120
EASGEICPSR IQRKSIPTPR SSAGGASRTG IRSHEDDSPS GVVDTKRLKK EEMDAIGGPS  180
GEPQKGLEFN SANDAYKFYH TYAANVGFRI RIGQLFRSKH DGSITSRRFV CSKEGHQHPS  240
RVGCGAYMRI QRHESGRWVV DRLQKEHNHA LGTPLDPNCT VSIASKGYRE EGSNVLENLD  300
LVETNGGLSL VKRVRETWQI LAKEQENLGA LLSMDAKFKY EYETCIFQSQ TASEFDFAWN  360
LLMDKYHLTE NAWFKEMYQM RKSWVPLHIK GTFFAGIPVD GSLKCVFNTI LTPQTPLNEF  420
IVRYENALEK RYEEERKEDF NSFNMQTALH TKDPIEEQCR RLYTITMFKV FQKELLDCYN  480
YVGTKVNVEG AISRYLVQNC GNGDERNTVA FNASNLNIXX XXXXXXXXXX XXXHTLKVFQ  540
IMHIRELPSR YILHRWSKNA KYGIMRDSDS LGGSQNFKAL MRAEGISVGK TRTILKHSEE  600
IKGNWRMEMA LVTVLALELI GHFHYKFLNN M

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090830.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBL	A0A103XIS0	0.0	A0A103XIS0_CYNCS; Uncharacterized protein
STRING	Migut.N00138.1.p	1e-176	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30