PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100026100061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 36869.3 Da PI: 8.5697 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.3e-05 | 223 | 261 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Ote100026100061|100026100061 223 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 261 7788899*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.433 | 211 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-5 | 221 | 265 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-11 | 221 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-9 | 225 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MAPDIAAYNW PTNATANSTT THHCDQNLQQ HSRIKQELAD QYYRRYADML TQSSSDDLSL 60 RNDLLHNDVA TKFLLKSFSY GNLTSKIHLS PTPDFYSVGN AANARGFTQI SNQMAVTPPV 120 SLDMNLEALD LLASSRFSGN FATSTHNQME ILRDGFSDYG FDHMQQSHQI PFYSSNKVSS 180 ASSNAVVEAK RNSNKMEPKA QFQNAPKKSR LEARSSCPPF KVRKEKLGDR IAALQQLVAP 240 FGKTDTASVL MEAIGYIKFL QNQVETLSVP YMKSSRNKPD RLTKGDPSES ENEESKRDLK 300 SRGLCLVPLS CLSYITDGGG AAVWPPPHFG GAT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020550876.1 | 1e-145 | transcription factor bHLH110 isoform X3 | ||||
Swissprot | Q9SFZ3 | 2e-58 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A4D9AVK1 | 1e-131 | A0A4D9AVK1_SALSN; Uncharacterized protein | ||||
STRING | Migut.C00762.1.p | 1e-110 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7533 | 22 | 27 |
Publications ? help Back to Top | |||
---|---|---|---|
|