PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100025880051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 624aa    MW: 68940.1 Da    PI: 7.0446
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100025880051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.2e-28215268155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Ote100025880051|100025880051 215 KPRVVWSVELHQQFVIAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 268
                                   79*******************.********************************8 PP
2Response_reg74.15.5e-25331411109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   vl+vdD+p+ +++l+++l++  y ev+++  +e al+ l++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a
  Ote100025880051|100025880051  33 VLVVDDDPTCLRILEKMLKNCLY-EVTTCNRAEVALNFLRDNKsgCDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSA 111
                                   89*********************.***************999999**********************6644.8******** PP

                                   TTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpeelvk 109
                                    +++  + + +  Ga d+l Kp+ +e+l +
  Ote100025880051|100025880051 112 DDSKHVVMKGVTHGACDYLIKPVRIEALKN 141
                                   **************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.0E-16812613IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-3430154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4130159No hitNo description
SMARTSM004481.4E-2931143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.46632147IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.5E-2233141IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.85E-2634146No hitNo description
SuperFamilySSF466893.23E-20212272IPR009057Homeodomain-like
PROSITE profilePS5129410.762212271IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-30214273IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24215268IPR006447Myb domain, plants
PfamPF002497.6E-7217267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MDLGAKSLTF TSSNASWKSG DVVAGQFPAG MKVLVVDDDP TCLRILEKML KNCLYEVTTC  60
NRAEVALNFL RDNKSGCDIV ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS ADDSKHVVMK  120
GVTHGACDYL IKPVRIEALK NIWQHVVRKK KQEXXXXXXX EHSGSVEEGE LRQQKPLEDV  180
DCSSSVNEGN WKNSXXXXXX XXXXXXXDDT STLKKPRVVW SVELHQQFVI AVNQLGIDKA  240
VPKKILELMN VPGLTRENVA SHLQKYRLYL RRLSGVSHHQ NGLGNSFMGS SDAPFGPLST  300
LNGVDLQALA ASGQLPPQSL ASIQAAALGR TASKSTMPSL PLVEQRNVFN FENPKPRFVE  360
GQQQQNDNSK QPNLLHGIPT NMDSKQLANL HQSALGMNMH VPSQTSQSNS LMMQMVQPQS  420
RNRILNEIIG SHVSNPSHVI PSAVLGQNRM ENNRAPQYTS MSRPSTSTEF SSQSRECSGN  480
AFPLVSNSGL LSAEMKGSRG LPPNYDVLNN LNQNRNEDWR LHNVGSTFVL PPQHSNIQPS  540
VLMEQHSSSN KAGFIGQQLN FSASDKPLRN MSERLPEMGF KNGLLPGRFG QEDLMSALLK  600
QQEGVGAVES EFGFDGYHLD NLPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21214274464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100813.10.0two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-179ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2G9HNZ30.0A0A2G9HNZ3_9LAMI; Two-component response regulator
STRINGMigut.G00111.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]