PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100025250011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 208aa MW: 24365.7 Da PI: 6.5282 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.2 | 1.8e-10 | 136 | 170 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+++++ LA+++gL+++q+ +WF N+R ++ Ote100025250011|100025250011 136 KWPYPSESQKQALAESTGLDQKQINNWFINQRKRH 170 569*****************************885 PP | |||||||
2 | ELK | 38.8 | 2e-13 | 90 | 111 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr YsgyLgsLkqEF+ Ote100025250011|100025250011 90 ELKGQLLRRYSGYLGSLKQEFM 111 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 2.5E-24 | 2 | 53 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.9E-21 | 6 | 52 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.912 | 90 | 110 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.7E-11 | 90 | 111 | IPR005539 | ELK domain |
SMART | SM01188 | 8.6E-8 | 90 | 111 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.232 | 110 | 173 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-13 | 112 | 177 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-20 | 112 | 187 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-29 | 115 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.26E-12 | 122 | 174 | No hit | No description |
Pfam | PF05920 | 7.7E-18 | 130 | 169 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 148 | 171 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSRSNVGEDP ALDQFMEAYC EMLIKYEQEL SKPFKEAMRF LSRIEFQFKS LTLSPSAAAA 60 CVETMETNGS PEEEADVNNN FIDPLAEDRE LKGQLLRRYS GYLGSLKQEF MKKRKKGKLP 120 KEARQQLLDW WSRHYKWPYP SESQKQALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFV 180 VMDATHPHYY MDNVLGNPFP MDISPALL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889118.1 | 1e-125 | homeobox protein SBH1 | ||||
Swissprot | O22299 | 1e-116 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A0A4D9AZG1 | 1e-130 | A0A4D9AZG1_SALSN; Uncharacterized protein | ||||
STRING | EOY28807 | 1e-122 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6835 | 24 | 33 |