PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100023940131

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 405aa MW: 44356.1 Da PI: 6.7821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100023940131	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	339	384	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + +++L +Av+YIk+Lq Ote100023940131\|100023940131 339 SIAERVRRTKISERMRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 384 689*******************6....4679**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.875	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.24E-15	336	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.66E-12	337	388	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-14	338	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-12	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-9	339	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MMNSQQQFDQ NTQMGSGLTR YRSAPSSYFA SLLNSPGGDG GFGADDFAQL FNPRASSPET 60 QMIFSRFMNS TGAVQEPCPS NMAPPSLTPR KSKTEEYXXX XXXXXXDYSS ASQMMYANQN 120 TEAATEPAAV DRIFASFNSS CAAAQPKMER PAAASSSLIR HSSSPAGLFA NINIENVSDY 180 KTMRGYGGGH SIDAEASFSS TRRVMGRHTS SGMMDTISEM GSKGMGENAA DDAQFDGDNG 240 SVIDDYITGL PVNSWDDSAL MSDPYLKGVA PDNENKRFFN SNASDDQKNE AANRPKTLLS 300 HHLSLPKSSA ELSAMEKLLQ DSVPCKIRAK RGCATHPRSI AERVRRTKIS ERMRKLQELV 360 PNMEKQTNTS DMLDLAVDYI KELQRQLKTL TDNQAKCNCS AKQRS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MMNSQQQFDQ NTQMGSGLTR YRSAPSSYFA SLLNSPGGDG GFGADDFAQL FNPRASSPET  60
QMIFSRFMNS TGAVQEPCPS NMAPPSLTPR KSKTEEYXXX XXXXXXDYSS ASQMMYANQN  120
TEAATEPAAV DRIFASFNSS CAAAQPKMER PAAASSSLIR HSSSPAGLFA NINIENVSDY  180
KTMRGYGGGH SIDAEASFSS TRRVMGRHTS SGMMDTISEM GSKGMGENAA DDAQFDGDNG  240
SVIDDYITGL PVNSWDDSAL MSDPYLKGVA PDNENKRFFN SNASDDQKNE AANRPKTLLS  300
HHLSLPKSSA ELSAMEKLLQ DSVPCKIRAK RGCATHPRSI AERVRRTKIS ERMRKLQELV  360
PNMEKQTNTS DMLDLAVDYI KELQRQLKTL TDNQAKCNCS AKQRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080320.1	1e-152	transcription factor bHLH130
TrEMBL	A0A0H3YC40	1e-148	A0A0H3YC40_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D00568.1.p	1e-121	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39