PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100022620141
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 265aa    MW: 29627.5 Da    PI: 6.4164
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100022620141genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.83e-142264145
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                  rg ++ +E  ++v++++ lG++ W+ Ia++++ gRt++++k++w+
  Ote100022620141|100022620141 22 RGGFSRQEATIIVELHNVLGNK-WAQIAKHLP-GRTDNEVKNFWN 64
                                  78899*****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.31116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-5215IPR009057Homeodomain-like
SuperFamilySSF466892.78E-20374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-231671IPR009057Homeodomain-like
PROSITE profilePS5129420.8931771IPR017930Myb domain
SMARTSM007172.8E-132169IPR001005SANT/Myb domain
PfamPF002491.7E-122265IPR001005SANT/Myb domain
CDDcd001675.31E-102564No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
LQRCGKSCRL RWINYLRPDL KRGGFSRQEA TIIVELHNVL GNKWAQIAKH LPGRTDNEVK  60
NFWNSSVKKK FVSENGKIKD MDKEFAESXX XXXXXXXXXF IPFQFQTMMN SHADLAPMQP  120
TFSLYNLTPQ NFIPYHHHPT IKQDHDLVFG SNAPNPAFMP SNLETQTNHG GYYYYPNSSM  180
FEHIASETAA QPPPYEEDIA GIDASFMAAP PSPMSYLETL IAEIESTSTV SGSFSAASTT  240
PPCSSGGGSS LIDDRAFVSF WGAQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2237140108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059PSS64e-64A0A059PSS6_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154