PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100022600031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 376aa    MW: 42910.2 Da    PI: 6.6153
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100022600031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.76.4e-24185239156
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                   k+r++Wt++LH++F+eaveqL G e+  Pk+il+lm+v+ L++e+v+SHLQkYRl+
  Ote100022600031|100022600031 185 KARVVWTTNLHDKFLEAVEQL-GLENVGPKKILDLMGVPWLSRENVASHLQKYRLH 239
                                   68*******************.9*******************************97 PP
2Response_reg35.74.6e-131794177
                                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEE CS
                  Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivv 77
                                  vl+vdD+ + ++++++ l k +y +++ +  ++eal+l+++++  +D+++ D+++p+md + +l +  + +++lp i v
  Ote100022600031|100022600031 17 VLVVDDDSAWLKIFEKRLIKCNY-QATICNLAQEALDLIEKRKdgFDIVISDVNLPDMDCFVFLDQVGRLNMNLPLISV 94
                                  89*********************.***************999999**********************999999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-2114129No hitNo description
SuperFamilySSF521721.99E-1914143IPR011006CheY-like superfamily
PROSITE profilePS5011022.41216125IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.5E-91794IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.39E-121892No hitNo description
Gene3DG3DSA:1.10.10.601.6E-25183242IPR009057Homeodomain-like
SuperFamilySSF466896.09E-17183240IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-23185239IPR006447Myb domain, plants
PfamPF002491.0E-7187237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MASTSFWSDP FPAGLRVLVV DDDSAWLKIF EKRLIKCNYQ ATICNLAQEA LDLIEKRKDG  60
FDIVISDVNL PDMDCFVFLD QVGRLNMNLP LISVESCXXX XXXXXXXLLK PIRAKELRNI  120
WQHVVRRRMH DLESLGAKEG VEETRKRMHD LENSEETLVY STTDDPKKRK DNENADSSSS  180
SSMKKARVVW TTNLHDKFLE AVEQLGLENV GPKKILDLMG VPWLSRENVA SHLQKYRLHL  240
LRKKKENEVK TVAQSMYLQS GVYPNSLTLQ QNIVINENYG GLSIHEAGGV MPVPYSWNGG  300
AASISQIKSE HHYNHFPLVS DTNNRSHAIE TISTPQHSLL PHLHYNMENP HLAKIESFGQ  360
HNFDDEYGSN QFIGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17181240160ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071178.16e-91two-component response regulator ORR26
SwissprotQ5N6V84e-74ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A022Q1S71e-86A0A022Q1S7_ERYGU; Uncharacterized protein
STRINGMigut.E00229.1.p3e-84(Erythranthe guttata)
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]