PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100022510021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 448aa MW: 51746.8 Da PI: 6.6629

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100022510021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.3	5e-24	144	236	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 +Wt+++v++Li+a++++ e+ + ++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e Ote100022510021\|100022510021 144 KWTDSMVRLLITAVSYISEEAGVSRgkctnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCE 224 7************99999885544467779*******************************************6699 PP trihelix 75 ssstcpyfdqle 86 ++++ ++d ++ Ote100022510021\|100022510021 225 VVEKPTLLDVMD 236 999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-22	142	262	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MCSQRKTGVA VAELGDLDVF LKVMEGNLSS RSAMQGNTSF GGFDLQGPMR VHHHQQQVLA 60 SHRHSNPHLR QGSSMVHHTI HENFPLTMGS TQEEPTFSLT DYNKLDRGKS GSDDDDPSIT 120 EDGADNPSDP SKGKKSSSPW QRVKWTDSMV RLLITAVSYI SEEAGVSRGK CTNLHKKGKW 180 KSVSKVMAER GHFVSPQQCE DKFNDLNKRY KRLNEILGRG TSCEVVEKPT LLDVMDHISE 240 KAKDEVRKIL SSKHLHYEEM CSYHNGNRLH LPPDPDLQRS LRLALRSGDD HDEVDAKRHL 300 NEDNDEDDQD GEFDDHGEYE EDHRVYLQGN PSKRVKQCQT HDEITFRNSL SSLDCNKTFS 360 FQVENTDFDG NKVPKQSLSH WNVQIKEQRL SIEMQMLELE RERFKWQRFC RKKDRELEVM 420 RMEIERMKLE NERMALELRR KELGSVNN

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MCSQRKTGVA VAELGDLDVF LKVMEGNLSS RSAMQGNTSF GGFDLQGPMR VHHHQQQVLA  60
SHRHSNPHLR QGSSMVHHTI HENFPLTMGS TQEEPTFSLT DYNKLDRGKS GSDDDDPSIT  120
EDGADNPSDP SKGKKSSSPW QRVKWTDSMV RLLITAVSYI SEEAGVSRGK CTNLHKKGKW  180
KSVSKVMAER GHFVSPQQCE DKFNDLNKRY KRLNEILGRG TSCEVVEKPT LLDVMDHISE  240
KAKDEVRKIL SSKHLHYEEM CSYHNGNRLH LPPDPDLQRS LRLALRSGDD HDEVDAKRHL  300
NEDNDEDDQD GEFDDHGEYE EDHRVYLQGN PSKRVKQCQT HDEITFRNSL SSLDCNKTFS  360
FQVENTDFDG NKVPKQSLSH WNVQIKEQRL SIEMQMLELE RERFKWQRFC RKKDRELEVM  420
RMEIERMKLE NERMALELRR KELGSVNN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074759.1	0.0	uncharacterized protein LOC105159405
TrEMBL	A0A4D8ZD59	0.0	A0A4D8ZD59_SALSN; Uncharacterized protein
STRING	Migut.N03227.1.p	1e-174	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30