PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100022230112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 28714.2 Da PI: 10.4713 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.7e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + + R+ ++k++w++ Ote100022230112|100022230112 5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPQfsgvlYLRSNVDLKDKWRN 55 79***********************************88***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.658 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.99E-16 | 2 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-9 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.03E-18 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 3.92E-6 | 117 | 156 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-5 | 120 | 157 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPQFSGV LYLRSNVDLK DKWRNMSVMA 60 NGWGSRERAR LALKRMKPGP KHGESSMALS TLSQSDDELA DARSLDLSCG SSPNDGPKRS 120 IMRLDNLILE AIRNLREPGG SNKTSIAAYI EMKRKYKIAA ASALSEPREN PSIPVEGRQR 180 ISPRIRHDDI GHLTKSEIDV ELAKMRSMTP EEAAAAAAQA VAEAEAAMAE AEEXXXRLVK 240 LRQQKLMQKQ HRLLPRQH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088080.1 | 1e-124 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_020552115.1 | 1e-124 | telomere repeat-binding factor 1 isoform X1 | ||||
Swissprot | Q8VWK4 | 7e-76 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A4D8YTK0 | 1e-123 | A0A4D8YTK0_SALSN; Myb proto-oncogene protein, plant | ||||
TrEMBL | A0A4D9BGI6 | 1e-123 | A0A4D9BGI6_SALSN; Myb proto-oncogene protein, plant | ||||
STRING | Migut.B00451.1.p | 1e-111 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2864 | 24 | 48 |
Publications ? help Back to Top | |||
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