PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100022230071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 377aa    MW: 41760.4 Da    PI: 4.8745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100022230071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-113003401055
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   r+RR+riN+++  L++l+P+      +K++ +++Le+AveY+k Lq
  Ote100022230071|100022230071 300 RKRRERINERLKVLQTLVPNG-----TKVDISTMLEEAVEYVKFLQ 340
                                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.497290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14290356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13295354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.96E-13299344No hitNo description
PfamPF000107.7E-9300340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEHIDAIPEC EWSSLNEICS EDAEFMAQFL GNSSLPNEVL NNTNFIVSPT VWPTLEPNRN  60
FAVVDETAMY SFDETNTTSM CSLSQGISSY CGGSSIVFPF SSQESYNSSS LSQYVSVTNN  120
NSMTMDHCTV EGKNGSHVHS AIVLAGCSDF LNHDVSNDSI ESNNDIMPED VREGKKLAFV  180
EGLVVPMPPR VPREDKIVSS SESRKRTRVP CDVPRNEKKM KFEQCPKFDD SDKDNNNNSN  240
AVLHRQSSTS CCSEDESNAS HEINGTTSCS SSKGSRALIS NGKTRASRGS ATDPQSIYAR  300
KRRERINERL KVLQTLVPNG TKVDISTMLE EAVEYVKFLQ LQIKLLSSDD HWMYAPIAYN  360
GMNIGLDLKI TTPKPQS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088156.11e-132transcription factor bHLH139-like
TrEMBLA0A022RB651e-129A0A022RB65_ERYGU; Uncharacterized protein
STRINGMigut.B00443.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101