PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100021970101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10560.7 Da PI: 9.0908 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 16 | 61 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT +++ +a +++ ++ +W+ Iar +g g+++++++ ++ Ote100021970101|100021970101 16 SWTSKQNKQFEEALARYDKDtpdRWHNIARAVG-GKSAEEVRRHYEV 61 7********************************.**********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.64 | 12 | 67 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5E-8 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-8 | 16 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-7 | 16 | 63 | No hit | No description |
SuperFamily | SSF46689 | 2.47E-13 | 16 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-7 | 16 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MASSSMTSAR TCFVSSWTSK QNKQFEEALA RYDKDTPDRW HNIARAVGGK SAEEVRRHYE 60 VLVKDIMQIE TDQVPIPNYR AHNRGYANEQ R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-28 | 17 | 80 | 11 | 74 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083673.1 | 1e-52 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 4e-33 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A4D9BCU0 | 1e-44 | A0A4D9BCU0_SALSN; Uncharacterized protein | ||||
STRING | Migut.C00747.1.p | 4e-41 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |