PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100021710051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

EIL

Protein Properties

Length: 333aa MW: 37033.2 Da PI: 4.5348

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100021710051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	84.3	2.9e-26	1	163	217	353
TGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX...XXXXXXXXXXXXXXXXXXXXXX.XXXXXX.X CS EIN3 217 msptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah...ssslrkqspkvtlsceqkedve.gkkeskik 293 msp+i++i +l+rqsk+lqdkm+akes+++l+++nqe ++ ++++++ s l +s ++ +s+++++dve +++ + k Ote100021710051\|100021710051 1 MSPDIAKIHKLVRQSKCLQDKMTAKESATWLAIINQEVALSRKLYPDnypLSPLVAGSGSFLVSDNSDYDVEgVEDGVECK 81 89*******************************************643337888************633334433 PP XXXXXXXXX...........................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXX CS EIN3 294 hvqavktta...........................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadkn 347 + +k +++++ krk + s+ + ++ ++tc+ sq+++++ ++f+d+ Ote100021710051\|100021710051 82 PID-RK--LfnfgvsatknkpmvlplapikgevfdaDVDFTLKRK-QCSSIEEHNTD-RIYTCEFSQCPHNDKLMGFNDQA 157 222.22..1346777888899**********9999999999.55555555555.46***************** PP XXXXXX CS EIN3 348 sisqne 353 +++++ Ote100021710051\|100021710051 158 WRNNHQ 163 *998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.3E-9	1	37	No hit	No description
Gene3D	G3DSA:1.10.3180.10	5.5E-16	1	47	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	2.75E-11	1	40	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSPDIAKIHK LVRQSKCLQD KMTAKESATW LAIINQEVAL SRKLYPDNYP LSPLVAGSGS 60 FLVSDNSDYD VEGVEDGVEC KPIDRKLFNF GVSATKNKPM VLPLAPIKGE VFDADVDFTL 120 KRKQCSSIEE HNTDRIYTCE FSQCPHNDKL MGFNDQAWRN NHQNNCQFRF SSSERVSAPV 180 CHAPSNDLVM NNAPTSVNVS ELGIPEDGQK MINELMSMYD NNLLANNGFD SEHFNNLMGQ 240 NPQPSAIQLE QGGDFIRQGG LSQVGAFQEA SAPLNNSTFL AAEFPYDQCR SLYNSSFNGG 300 TEENFAEFRL DSPFNFTSGD FSVDPSQKHE VPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	2e-19	1	48	87	134	Protein ETHYLENE INSENSITIVE 3
4zds_B	2e-19	1	48	87	134	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552892.1	1e-112	protein ETHYLENE INSENSITIVE 3-like
Swissprot	Q9SLH0	2e-47	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	A0A4D9AWB1	1e-162	A0A4D9AWB1_SALSN; Ethylene-insensitive protein 3
STRING	VIT_13s0047g00250.t01	2e-90	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]