PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100021640121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 296aa MW: 33435.4 Da PI: 8.6252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100021640121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	141	180	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+ l+P + +k Ka +L + ++Y++sLq Ote100021640121\|100021640121 141 RRERISERMKLLQALVPGC----DKVTGKALMLDEIINYVQSLQ 180 9***************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.956	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-12	140	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-4	140	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.03E-7	141	184	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-11	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAAFSSFQHL DSSSLSVFLP NSPSSPPTTI NRMCALFDDP NNALSPHFHQ HNATTNHHHS 60 PPLNIDTNKN SMDSSLSVVS HPKKLTPINN KRKSKHXXXX XXPNSAQSKD MRSEVKGKKK 120 RKEKMGKKQD EEAPAGYIHV RRERISERMK LLQALVPGCD KVTGKALMLD EIINYVQSLQ 180 NQVEFLSMKL ASFNPIFYDF GMDLESYMVR PDQNLNGLPS PLPAGMQECN PTTANSYPVL 240 DNNHNNSVNS LLLHQHQIPD APPQVDRQVL WDVDDQRQKI INQCGINNNF FSFPLM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073133.1	2e-77	transcription factor bHLH137
TrEMBL	A0A0H3YB18	1e-106	A0A0H3YB18_SALMI; Basic helix-loop-helix transcription factor
STRING	PGSC0003DMT400051137	3e-70	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4116	23	45