PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100020730111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 761aa    MW: 82312.9 Da    PI: 6.0365
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100020730111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54.2e-16466504240
                           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   ++k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  Ote100020730111|100020730111 466 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 504
                                   689**********************************96 PP
2TCR51.22.6e-16551589139
                           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                   ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Ote100020730111|100020730111 551 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 589
                                   589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-18465506IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.989466591IPR005172CRC domain
PfamPF036386.7E-12468503IPR005172CRC domain
SMARTSM011147.5E-18551592IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.4E-12553589IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MDTPERSKDS QIATSIGKFE DSPVFNFLNS LSPIKPIKPT HVTQTINPLS FASLPSVFSS  60
PHLSSLKESK FLRRPHLLDP SKPEFSSDDG NMVDTSNLLV HMAAKLVEQK EKLDPRASEC  120
ENAGEPSYES SKLVVEIAES LNCESGMVNS SLSCLKTKHV AECACTSSAC EPFVQEQRNA  180
EISEANLMGS GNLDQSNWDS LICDASYLLG SGSLNTETCG KSVDPATTFY RSIKNAIQNA  240
ESLETVVCGE RVREGREAEN MPNQPGEGTE SIENAGKHDT VIDSSFSNSS QQIDCESLSG  300
IYRGMRRRCL VFEMSGADGK HMEDSSGSDS PTLLRSDDNS SNQQIVHNKR EDDTSRALPG  360
IGLHLNVLAA TSKDFKIVNH ESSASGRLLI GPSSSANLRP ATSGQGLLNN TFSNYSLERE  420
IDTFGSGGLS VEDPSQESGY IANEDVNPGS PKKRRRRLDQ GGDGESCKRC NCKKSKCLKL  480
YCECFAAGVY CVEPCACIDC FNKPIHEDTV LATRKQIESR NPLAFAPKVI RGSDSLPELG  540
DDLTNTPASA RHKRGCNCKK SGCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSGSSS  600
SEPEYKEDEM DTTEKAAHDA GLYRSAIHDD LERCMDSAPP ATPLGTGRQP YQSFSNKRPP  660
RATFPSISSY SGLSVSQPFG KSSLIPAPPK FNPCFETVEE DEMPHFLLGG GGSPIGGIKS  720
SSPNRKRVSP PLRLEVATGL RSSRKLILQS IPSFPSLAPN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1846858812120Protein lin-54 homolog
5fd3_B1e-1846858812120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073448.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A4D8Y9450.0A0A4D8Y945_SALSN; Uncharacterized protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345