PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100019830111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 624aa    MW: 68427.7 Da    PI: 6.2478
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100019830111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.44.4e-25208257151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ
  Ote100019830111|100019830111 208 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQ 257
                                   79*******************.***************************** PP
2Response_reg745.9e-25241321109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   vl+vdD+ + +++l+q+l+k  y +v+ +++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i+++a
  Ote100019830111|100019830111  24 VLVVDDDVICLRVLEQMLRKCLY-NVTCCSQATIALNLLRERKgsFDIVLSDVHMPNMDGFKLLELVGL-EMDLPVIMMSA 102
                                   89*********************.***************999999*******************87754.558******** PP

                                   TTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpeelvk 109
                                    g  +++l+ ++ Ga d+l Kp+  eel +
  Ote100019830111|100019830111 103 DGRTNLVLRGVRHGACDYLIKPIRDEELKN 132
                                   ***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.2E-1422624IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.5E-4121158No hitNo description
SuperFamilySSF521722.99E-3421145IPR011006CheY-like superfamily
SMARTSM004483.2E-2922134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.65423138IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.1E-2224132IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.20E-2725137No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25205257IPR009057Homeodomain-like
PROSITE profilePS5129410.694205264IPR017930Myb domain
SuperFamilySSF466896.09E-16206258IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-22208261IPR006447Myb domain, plants
PfamPF002496.3E-6210257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MACASGGKSE LAVVSQQFPA GLRVLVVDDD VICLRVLEQM LRKCLYNVTC CSQATIALNL  60
LRERKGSFDI VLSDVHMPNM DGFKLLELVG LEMDLPVIMM SADGRTNLVL RGVRHGACDY  120
LIKPIRDEEL KNIWQHVVRK KQNEMKEHDH TSSIEDQDRP KRPIDDAEYA SSANEGADEV  180
LKGQKKRKDT KDEDDVEIEN DDPTSSKKPR VVWSVELHQQ FVTAVNQLGI DKAVPKRILE  240
LMNVPGLTRE NVASHLQFLH NRLVXXXAPY CGPVEQNLKL ASLGRIDFQA LAASGQLPPQ  300
TIAALQAELL SRPTGNIILP GMDQRILLHA SLQGSKCIPV DRVVYGQSPI KCSSNIAKQS  360
PQTLMSNNDV GPEFAAWLSK NLGDMVPASN LGGAVAGTNS NMLTFVQQQQ KQSMIPEPSH  420
SIDVQPSCLV NPSQSSTNHQ AGNSPVSVNQ NCSFRNSSVD FNNPLFQSDN SSGIGQILEV  480
ECKALRVPSE FGAAASVSST SSCSRNIQES AYQRVQSSPS TTNAFMQLPN TNFVQGSYNV  540
KLNSVQGSTR NPGYVGKGTS IPSRFAVDEQ ELQMSSQSQV KPYAENNGNK VKLEPNMDLM  600
ENVKLGIPVQ QHFSQNDLMS VFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18204257154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070559.10.0two-component response regulator ORR21
SwissprotA2XE311e-154ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-154ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A4D9B0A90.0A0A4D9B0A9_SALSN; Two-component response regulator ARR-B family
STRINGVIT_01s0011g05830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]