PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100019690111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27731 Da PI: 5.9762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l +v ++G +W++ ++ g+ R++k+c++rw +yl Ote100019690111|100019690111 14 KGAWSKEEDEKLRAYVDRFGQANWRLLPSLAGLARCGKSCRLRWVNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 60.1 | 4.6e-19 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T+ E++l++++++qlG++ W+tIa +m+ gRt++++k++w+ Ote100019690111|100019690111 67 RGKFTKHEEDLIIKLHHQLGNK-WSTIATKMP-GRTDNEIKNYWH 109 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.717 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.91E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.514 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.48E-11 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-25 | 69 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVKPPAFDSN GMKKGAWSKE EDEKLRAYVD RFGQANWRLL PSLAGLARCG KSCRLRWVNY 60 LKPGLKRGKF TKHEEDLIIK LHHQLGNKWS TIATKMPGRT DNEIKNYWHS RVKKVGRRGS 120 NATNLKEEDQ ESSSSGLINS FVTIDHQDKN PKNTDPLDSI ADLYSFAQAE DDRLTCFGQL 180 NVDLSPLFPE EELHDFEFFG DLQNDSSNSL DDGSNVCSSS TVEFRRNLWF ESLADDVLDV 240 VLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 114 | 7 | 106 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852362.1 | 6e-78 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9SZP1 | 6e-49 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | W8SLK8 | 4e-89 | W8SLK8_SALMI; Transcription factor mybp | ||||
STRING | Migut.M00366.1.p | 2e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |