PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100019690111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 243aa    MW: 27731 Da    PI: 5.9762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100019690111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEde+l  +v ++G  +W++ ++  g+ R++k+c++rw +yl
  Ote100019690111|100019690111 14 KGAWSKEEDEKLRAYVDRFGQANWRLLPSLAGLARCGKSCRLRWVNYL 61
                                  79********************************************97 PP

2Myb_DNA-binding60.14.6e-1967109145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rg++T+ E++l++++++qlG++ W+tIa +m+ gRt++++k++w+
  Ote100019690111|100019690111  67 RGKFTKHEEDLIIKLHHQLGNK-WSTIATKMP-GRTDNEIKNYWH 109
                                   89********************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.717961IPR017930Myb domain
SuperFamilySSF466899.36E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-111363IPR001005SANT/Myb domain
PfamPF002494.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-221568IPR009057Homeodomain-like
CDDcd001679.91E-91661No hitNo description
PROSITE profilePS5129423.51462116IPR017930Myb domain
SMARTSM007177.1E-1666114IPR001005SANT/Myb domain
PfamPF002494.0E-1667109IPR001005SANT/Myb domain
CDDcd001673.48E-1169109No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2569114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKPPAFDSN GMKKGAWSKE EDEKLRAYVD RFGQANWRLL PSLAGLARCG KSCRLRWVNY  60
LKPGLKRGKF TKHEEDLIIK LHHQLGNKWS TIATKMPGRT DNEIKNYWHS RVKKVGRRGS  120
NATNLKEEDQ ESSSSGLINS FVTIDHQDKN PKNTDPLDSI ADLYSFAQAE DDRLTCFGQL  180
NVDLSPLFPE EELHDFEFFG DLQNDSSNSL DDGSNVCSSS TVEFRRNLWF ESLADDVLDV  240
VLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141147106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852362.16e-78PREDICTED: transcription factor MYB34-like
SwissprotQ9SZP16e-49MYB4_ARATH; Transcription repressor MYB4
TrEMBLW8SLK84e-89W8SLK8_SALMI; Transcription factor mybp
STRINGMigut.M00366.1.p2e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]