PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100019670261
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 127aa    MW: 14072.5 Da    PI: 6.5453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100019670261genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45.1e-1556951150
                                  HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                   tf+kRr  ++ KA E S+LC+ae+a+++ s+ +k+++++
  Ote100019670261|100019670261 56 PTFTKRRRVLFIKACEFSILCGAEIAILVQSPANKMFTFA 95
                                  59************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-83897IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-1450106IPR002100Transcription factor, MADS-box
PfamPF003192.7E-145694IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.1995798IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-66075IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-67596IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDAVLKALME MGIVEIVLTT SSEKCSERVD IFQPSPSAVR RSQTLVGTCK EENWAPTFTK  60
RRRVLFIKAC EFSILCGAEI AILVQSPANK MFTFALPTVE VLIDRLTLPA EAAEDNRATP  120
AEIVTRK