PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100019660061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 347aa MW: 38710.5 Da PI: 8.4783

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100019660061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	211	269	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK+ +i eLe+kv++L++e ++L ++ l+ke +l +++ Ote100019660061\|100019660061 211 KRAKRILANRQSAARSKERKLRYISELEQKVQTLQTESTTLSTQITILQKEHTELSNQN 269 9**************************************************99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-17	207	271	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.473	209	272	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-10	211	269	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.75E-12	211	267	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.8E-12	211	267	No hit	No description
CDD	cd14703	1.36E-21	212	263	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MANNCLPPLS PFPPSESTLA SPNSNLKNMS MEEMDVCSRG PTTGLTSPRE NPFRGSGLPP 60 RRGHRRSNSD VPLGFSAMIQ SSPQLVPISS QGILGQMENT REKSGNDKPV NYSKNHVEEM 120 GERKSDGEVV DSLFESLMDL DCGANGRDKD TIVERGNYES GSLKRNAAVA PPLRHYRSLS 180 MDSGIGNFQF GELKKIRADE RLTEIAVSDP KRAKRILANR QSAARSKERK LRYISELEQK 240 VQTLQTESTT LSTQITILQK EHTELSNQNN ELKFRIHAME QQAQLRDDLT ENLMAALHET 300 LTAEVQRLKL ASMELREEGR TSKHNMFPLQ QPNRLSVTTT SSSTTTV

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MANNCLPPLS PFPPSESTLA SPNSNLKNMS MEEMDVCSRG PTTGLTSPRE NPFRGSGLPP  60
RRGHRRSNSD VPLGFSAMIQ SSPQLVPISS QGILGQMENT REKSGNDKPV NYSKNHVEEM  120
GERKSDGEVV DSLFESLMDL DCGANGRDKD TIVERGNYES GSLKRNAAVA PPLRHYRSLS  180
MDSGIGNFQF GELKKIRADE RLTEIAVSDP KRAKRILANR QSAARSKERK LRYISELEQK  240
VQTLQTESTT LSTQITILQK EHTELSNQNN ELKFRIHAME QQAQLRDDLT ENLMAALHET  300
LTAEVQRLKL ASMELREEGR TSKHNMFPLQ QPNRLSVTTT SSSTTTV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074646.1	1e-135	transcription factor RF2b
Swissprot	Q6S4P4	2e-42	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A4D8ZN93	1e-149	A0A4D8ZN93_SALSN; Uncharacterized protein
STRING	Migut.N03140.1.p	1e-120	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1265	24	78

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]