PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100018721021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 778aa    MW: 87027.4 Da    PI: 8.1851
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100018721021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.5e-24185286199
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L 
  Ote100018721021|100018721021 185 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLV 264
                                   99****************************86333.45679**************************************** PP

                                   TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                                   +gD v+F   + + +el+++++r+
  Ote100018721021|100018721021 265 SGDAVLFL--RGEAGELRLGIRRA 286
                                   ********..449999*****996 PP
2Auxin_resp107.31.7e-35311392182
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                                   +a+a+s++s+F+v+Y+Pras++ F+++++k+ k +++++ vG+Rf+m+f+ +ds+err+sG+v+gv d+dp+rWp+SkWr+
  Ote100018721021|100018721021 311 VAKALSSNSTFQVFYSPRASHAGFIIPYKKYIKCTTSQIPVGTRFRMKFDFDDSPERRFSGMVTGVGDIDPYRWPHSKWRC 391
                                   6899***************************************************************************** PP

                    Auxin_resp  82 L 82 
                                   L
  Ote100018721021|100018721021 392 L 392
                                   9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-44177299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-40178298IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-22183285No hitNo description
PfamPF023621.4E-21185286IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929185287IPR003340B3 DNA binding domain
SMARTSM010192.7E-23185287IPR003340B3 DNA binding domain
PfamPF065076.8E-30312392IPR010525Auxin response factor
PROSITE profilePS5174522.827679761IPR000270PB1 domain
SuperFamilySSF542771.91E-11681758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MSFAPLLCRV SWVGFYTSEV EKNNAXXXXX XXXXXXXXXX XLHTSISPSL SSNAASHISS  60
HCSESSPPSI YVELWHACAG PLTSLPKKEN VVVYFPQGHM EQAASASPFP PMDMPTFDLP  120
PQIFCRVIDV WLLANKENDE VYTQLCLLPL PELAGVKLDG KESENAGVDD DGNGVMPVKS  180
TSHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKEQR PSQELIAKDL HGVEWKFRHI  240
YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRGEAGELR LGIRRAVRPR NGLPDSIIKN  300
QSSYPSVLSP VAKALSSNST FQVFYSPRAS HAGFIIPYKK YIKCTTSQIP VGTRFRMKFD  360
FDDSPERRFS GMVTGVGDID PYRWPHSKWR CLMVRWDEDI MSNHQERVSP WDIAFSSGNY  420
APLSIQSSPR MKKLRSNLQV TPHGSPIAGG GAVLDLEESV RPSKVLQGQE NVGLASPLYR  480
SDHVNRQINF GMQPTTPNPV PNRMDKTNYG EFVRNHNFTG FLESNWFPKV LQGQEICSFK  540
SLAGRSTSDL GAWSKPQIGY NLHQRLTPGF YPLASEGARS MPIPHKNIHT TGQTPLMLSN  600
FHTGNRVLSP TSILSGTKAD ISRMPHLTSE PRAMERTSAA PTSLMHLGEN SLKEKVPTCK  660
IFGFSLTEDP ISLQGSGKRS CTKVHKQGSL VGRAIDLSRL NGYDDLLTEL ERLFSMEGLL  720
RDPNNGWRIL YTDSENDMMV VGDDPWHEFV EVATKIHIYT QEEVEKLXXX XXXXXXXR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1177341322352Auxin response factor 1
4ldy_B1e-1177341322352Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089884.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A191T8T20.0A0A191T8T2_SALMI; Auxin response factor
STRINGMigut.N02611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]