PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100018670101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 362aa MW: 40642.3 Da PI: 8.4507

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100018670101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.8	5e-13	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+++E++++++a +++ + Wk+I + +g +t q++s+ qky Ote100018670101\|100018670101 69 RESWSEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 113 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.19E-16	63	119	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.966	64	118	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.9E-18	67	116	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.7E-6	68	109	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-10	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-11	69	113	IPR001005	SANT/Myb domain
CDD	cd00167	5.17E-8	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVSVYRNPPP TQDLSRFHGF YMAGEPTKLP PVNRCDGDML PMAPPANVSS SLEDPNKKIR 60 KPYTITKSRE SWSEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN 120 GTSEHVPPPR PKRKAAHPYP QKASKSVVPR NSDPLQSSAA RVETGYAVGY DSSSIPRDPV 180 GSAPLSSWSY NVVPAGCFPH VSKDEFGLPS VANNYSSSSN DSTPRLWASN ETAEVKERQC 240 NTTRVIPDFS QVYGFIGSIF DPTATNHVQR LRKMDPINVE TVLMLMKNLC VNLMSPEFED 300 HSSMSKPRLI LNDELVIRMC SLRLMANELL LATMDVHAMM DKSLNVKLVG LKEGWEWSGG 360 EE

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVSVYRNPPP TQDLSRFHGF YMAGEPTKLP PVNRCDGDML PMAPPANVSS SLEDPNKKIR  60
KPYTITKSRE SWSEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN  120
GTSEHVPPPR PKRKAAHPYP QKASKSVVPR NSDPLQSSAA RVETGYAVGY DSSSIPRDPV  180
GSAPLSSWSY NVVPAGCFPH VSKDEFGLPS VANNYSSSSN DSTPRLWASN ETAEVKERQC  240
NTTRVIPDFS QVYGFIGSIF DPTATNHVQR LRKMDPINVE TVLMLMKNLC VNLMSPEFED  300
HSSMSKPRLI LNDELVIRMC SLRLMANELL LATMDVHAMM DKSLNVKLVG LKEGWEWSGG  360
EE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093084.1	1e-144	protein REVEILLE 6 isoform X1
Swissprot	Q8H0W3	8e-92	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A4D9BC04	1e-160	A0A4D9BC04_SALSN; Uncharacterized protein
STRING	EOX95871	1e-122	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]