PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100018670061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 432aa MW: 48304.5 Da PI: 7.5494

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100018670061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	69	105	1	39
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 r +W+++E++++++a +++ + Wk+I + +g +t q Ote100018670061\|100018670061 69 RESWSEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQ 105 789***************77.*******.999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.8E-10	57	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-9	67	106	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.2E-4	68	106	IPR009057	Homeodomain-like
Pfam	PF00249	8.7E-7	69	105	IPR001005	SANT/Myb domain
CDD	cd00167	2.32E-5	71	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MVSVYRNPPP TQDLSRFHGF YMAGEPTKLP PVNRCDGDML PMAPPANVSS SLEDPNKKIR 60 KPYTITKSRE SWSEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQILVNL GIVSKFVDVA 120 CGLSLHFMIY SNLALSASPD TFSLNDLPFS DVMKLIVFVS LVSLIFFVGE IRSHAQKYFL 180 KVQKNGTSEH VPPPRPKRKA AHPYPQKASK SVVPRNSDPL QSSAARVETG YAVGYDSSSI 240 PRDPVGSAPL SSWSYNVVPA GCFPHVSKDE FGLPSVANNY SSSSNDSTPR LWASNETAEV 300 KERQCNTTRV IPDFSQVYGF IGSIFDPTAT NHVQRLRKMD PINVETVLML MKNLCVNLMS 360 PEFEDHSSMS KPRLILNDEL VIRMCSLRLM ANELLLATMD VHAMMDKSLN VKLVGLKEGW 420 EWSGGEEVFC MM

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MVSVYRNPPP TQDLSRFHGF YMAGEPTKLP PVNRCDGDML PMAPPANVSS SLEDPNKKIR  60
KPYTITKSRE SWSEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQILVNL GIVSKFVDVA  120
CGLSLHFMIY SNLALSASPD TFSLNDLPFS DVMKLIVFVS LVSLIFFVGE IRSHAQKYFL  180
KVQKNGTSEH VPPPRPKRKA AHPYPQKASK SVVPRNSDPL QSSAARVETG YAVGYDSSSI  240
PRDPVGSAPL SSWSYNVVPA GCFPHVSKDE FGLPSVANNY SSSSNDSTPR LWASNETAEV  300
KERQCNTTRV IPDFSQVYGF IGSIFDPTAT NHVQRLRKMD PINVETVLML MKNLCVNLMS  360
PEFEDHSSMS KPRLILNDEL VIRMCSLRLM ANELLLATMD VHAMMDKSLN VKLVGLKEGW  420
EWSGGEEVFC MM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093084.1	8e-83	protein REVEILLE 6 isoform X1
Swissprot	Q8H0W3	1e-50	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A4D9AYV8	1e-98	A0A4D9AYV8_SALSN; Uncharacterized protein
STRING	EOX95871	9e-77	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]