PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100018500041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 319aa MW: 37124.6 Da PI: 6.5646

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100018500041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.3e-55	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL +kv++ ++++ +++ evd++kvePwdLp +++ +ekewyfF+ rd+ky+tg r+nrat++g Ote100018500041\|100018500041 17 LPPGFRFHPTDEELVTHYLSHKVRDCNFHT-KAVGEVDLNKVEPWDLPWRAEIGEKEWYFFCVRDRKYPTGLRTNRATDAG 96 79************************99.88***********98899************************ PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkdke+++ + lvg+kktLvfy+grapkgekt+Wvmheyrl Ote100018500041\|100018500041 97 YWKATGKDKEIFR-AKILVGIKKTLVFYRGRAPKGEKTNWVMHEYRL 142 *********.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-62	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.991	17	166	IPR003441	NAC domain
Pfam	PF02365	3.4E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEGSYHHNTH DGEMTDLPPG FRFHPTDEEL VTHYLSHKVR DCNFHTKAVG EVDLNKVEPW 60 DLPWRAEIGE KEWYFFCVRD RKYPTGLRTN RATDAGYWKA TGKDKEIFRA KILVGIKKTL 120 VFYRGRAPKG EKTNWVMHEY RLQGKNSISF PKLEKKEWVL CRVFKKSSGG NKVHISGLVR 180 TDDPRLDLPS LIDFSPDENT TLNNAAEGSH VTCFSTLTQD PPYESIDRYI SSDMKFLHPN 240 SIFSSQINTR AENLHRLDSV SKQEHETVHH FYETQDIGKN EKMSPTICKY EDGLEPYDDN 300 RDFPIVSTEQ IDLDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-55	17	172	20	174	NAC domain-containing protein 19
3swm_B	5e-55	17	172	20	174	NAC domain-containing protein 19
3swm_C	5e-55	17	172	20	174	NAC domain-containing protein 19
3swm_D	5e-55	17	172	20	174	NAC domain-containing protein 19
3swp_A	5e-55	17	172	20	174	NAC domain-containing protein 19
3swp_B	5e-55	17	172	20	174	NAC domain-containing protein 19
3swp_C	5e-55	17	172	20	174	NAC domain-containing protein 19
3swp_D	5e-55	17	172	20	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098651.1	1e-128	NAC domain-containing protein 79
Swissprot	Q9FLJ2	1e-105	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G9GGL5	1e-126	A0A2G9GGL5_9LAMI; Uncharacterized protein
STRING	Migut.H00942.1.p	1e-113	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]