PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100018490011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 26119.2 Da PI: 5.97 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.1 | 1.2e-51 | 25 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknra 77 l+pGfrFhPtdeelv +yL++k+ gk+ ++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nra Ote100018490011|100018490011 25 LAPGFRFHPTDEELVRYYLRRKACGKPxxXXXXXXVTEIDVYKSEPWELAdySSLKTRDLEWYFFSPVDRKYGNGSRLNRA 105 579************************64333346**************84347777888********************* PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t +gyWkatgkd++v + k++++g+kktLvf++grap+g++t+Wvmheyrl Ote100018490011|100018490011 106 TGKGYWKATGKDRAVRH-KNQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 155 *****************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-61 | 23 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.442 | 25 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-29 | 27 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGQEVVVAVT AAQPAGGGAP PPTSLAPGFR FHPTDEELVR YYLRRKACGK PXXXXXXXXV 60 TEIDVYKSEP WELADYSSLK TRDLEWYFFS PVDRKYGNGS RLNRATGKGY WKATGKDRAV 120 RHKNQTIGMK KTLVFHSGRA PDGKRTNWVM HEYRLCDSEL ERAGVTQDAF VLCRIFQKSG 180 LGPPNGDRYA PFVEEEWDED AVVVVPGGDA EDDVANGDEA LECTHHDQKD AIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-50 | 24 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-50 | 24 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-50 | 24 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-50 | 24 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-50 | 24 | 178 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-50 | 24 | 178 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-50 | 24 | 178 | 16 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101542.1 | 1e-145 | NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q9SQY0 | 2e-92 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A2U5FKN3 | 1e-145 | A0A2U5FKN3_SALMI; NAC domain containing protein 2 | ||||
STRING | Migut.F01688.1.p | 1e-134 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3140 | 24 | 48 |
Publications ? help Back to Top | |||
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