PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100018280011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 334aa    MW: 36610.4 Da    PI: 7.9967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100018280011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.7e-16146192455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Ote100018280011|100018280011 146 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 192
                                   6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-21140209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-17145196No hitNo description
PfamPF000101.7E-13146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-21146200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
PRTEAAPSGR TARESTTVVE SNETPAIGPE SRISQTVADT RPLVNEESAT AKGGNTSTPA  60
GELVAGTCEV TVSSSPGGSR TSFSGETRQP QQKPAAAAVA ADDRKRKTRE TDDTECQSED  120
IEFEAAETKK QARGSASTKR SRAAEVHNLS ERRRRDRINE KMRALQELIP RCNKSDKASM  180
LDEAIEYLKS LQLQVQMMSM GCGMVPMMYP AGMQQYMPAX XXXXXXXXXX XXXXNRPMIP  240
YPSMMPGSAV PNPAAHMAPR FPLPPFHMAP VPVPDHTRMQ ATTQAEPAPN PSISNQNIPQ  300
TQNHPRLPNF DPYQQYLGFH HSQLPLPQAS LISP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591396.11e-113PREDICTED: transcription factor PIF1-like
RefseqXP_016448870.11e-114PREDICTED: transcription factor PIF1-like, partial
TrEMBLA0A0H3YBW71e-140A0A0H3YBW7_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009591396.11e-113(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341