PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100018040011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ERF | ||||||||
Protein Properties | Length: 129aa MW: 14490.4 Da PI: 10.6603 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+r ++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ a+k+++g Ote100018040011|100018040011 72 SKYRGIRLRP-WGKWAAEIRDPKK---GVRVWLGTFNTAEEAARAYDGAAKRIRG 122 89********.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.7E-14 | 72 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-22 | 72 | 129 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.72E-31 | 72 | 129 | No hit | No description |
SMART | SM00380 | 7.6E-31 | 73 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 73 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 73 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MCGGSIISDE PIINKKGKLS AEEFWAQLDA ISEFWGFDSS NDAASNHAQQ SIPINKEQHS 60 KSEKSNRKPR KSKYRGIRLR PWGKWAAEIR DPKKGVRVWL GTFNTAEEAA RAYDGAAKRI 120 RGGKAKLNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 74 | 129 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 74 | 129 | 6 | 62 | ATERF1 |
3gcc_A | 2e-21 | 74 | 129 | 6 | 62 | ATERF1 |
5wx9_A | 4e-21 | 73 | 129 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022874669.1 | 2e-58 | ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 7e-45 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2G9GW20 | 2e-59 | A0A2G9GW20_9LAMI; Uncharacterized protein | ||||
STRING | Migut.G00084.1.p | 9e-56 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |