PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100017900131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27794.1 Da PI: 7.0469 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.7 | 1.1e-40 | 6 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknrat 78 +p+GfrF Pt+eelv++yL++k+++++ e+++vi+ ++iy+++P+dLp+ e ++w+fFs r+++++t g r+nr t Ote100017900131|100017900131 6 VPKGFRFYPTEEELVSFYLHNKLHRTRPEIDRVIPLLHIYDYNPSDLPRgeYSPVEGEQWFFFSGREERETTrGGRPNRLT 86 589***************************999***************5334444888******99988876599****** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 k gyWkatg+ +v+s+ ++++g k+t+vfy+grap+g+kt W m ey+ Ote100017900131|100017900131 87 KWGYWKATGSPGDVYSSLNRVIGRKRTMVFYEGRAPHGTKTAWKMIEYK 135 *****************99*****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-42 | 4 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.587 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-20 | 7 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MEEEQVPKGF RFYPTEEELV SFYLHNKLHR TRPEIDRVIP LLHIYDYNPS DLPRGEYSPV 60 EGEQWFFFSG REERETTRGG RPNRLTKWGY WKATGSPGDV YSSLNRVIGR KRTMVFYEGR 120 APHGTKTAWK MIEYKAFSGS PPELREEVCL CRIYKLSKSL RAFDRRPPPV AVGGDEAGTQ 180 QNEATAFNIS AVVPEITDSS SSGDSSAAAD LHRFVKSWSD RRPENPSDGG EIFWDCARLN 240 WF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-24 | 1 | 159 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-24 | 1 | 159 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-24 | 1 | 159 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-24 | 1 | 159 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-24 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-24 | 1 | 159 | 12 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-24 | 1 | 159 | 12 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553649.1 | 7e-80 | NAC domain-containing protein 90-like isoform X2 | ||||
TrEMBL | A0A2G9GF60 | 2e-83 | A0A2G9GF60_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA19G38211.1 | 2e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |