PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100017230051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family BBR-BPC
Protein Properties Length: 310aa    MW: 34815.4 Da    PI: 9.7072
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100017230051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind327.63.5e-10013101301
                     GAGA_bind   1 mdddgsre.rnkg.yye............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdka 66 
                                   md+ g ++ r +  yy+            ++ ++++  ++ +l+ +  erda+irer+ al+ekk+a+ erd a +q d+a
  Ote100017230051|100017230051   1 MDEGGRENrRPRMdYYKvpqwntlpqyqiKEpNAFQ--MNAKLVMLCDERDAAIRERDRALAEKKSALDERDAAMKQLDAA 79 
                                   899999886666679999999999887773346677..9999**9************************************ PP

                     GAGA_bind  67 laernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakek 147
                                   + er++al erdn+++al ++en+++  l   ++  +g+k +++  + ++p+  +sa  lree +++alp ++ ++ea  +
  Ote100017230051|100017230051  80 VMERDDALRERDNAIAALHFHENTMSALL---SGGARGSKRTNHPTN-HHPNNIQSALSLREECMSDALPASHVPHEAPMS 156
                                   ***********************976555...778889999997777.888888899999999999999999988888888 PP

                     GAGA_bind 148 kkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGn 227
                                   kk +k++++k+ +++ ++++kk  +k  ++ +++ + + skae++ +dl ++n++ +Des++PvPvCsCtG++rqCYkWGn
  Ote100017230051|100017230051 157 KKGSKTKSNKVSQTRSTRSPKKV-KKIGEDLNRQVTTDGSKAEWDAQDLgSMNQIIFDESSMPVPVCSCTGVPRQCYKWGN 236
                                   88888888877777777777774.4445666666666779*********88****************************** PP

                     GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                   GGWqS+CCtt++SvyPLP+++++r+aR++grKmS+++f++lL +Laa  +dls pvDLkdhWAkHGtn+++ti+
  Ote100017230051|100017230051 237 GGWQSSCCTTSLSVYPLPQMPNKRHARMGGRKMSGSVFSRLLTRLAASDHDLSIPVDLKDHWAKHGTNRYITIK 310
                                   *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.8E-911310IPR010409GAGA-binding transcriptional activator
SMARTSM012263.9E-1131310IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDEGGRENRR PRMDYYKVPQ WNTLPQYQIK EPNAFQMNAK LVMLCDERDA AIRERDRALA  60
EKKSALDERD AAMKQLDAAV MERDDALRER DNAIAALHFH ENTMSALLSG GARGSKRTNH  120
PTNHHPNNIQ SALSLREECM SDALPASHVP HEAPMSKKGS KTKSNKVSQT RSTRSPKKVK  180
KIGEDLNRQV TTDGSKAEWD AQDLGSMNQI IFDESSMPVP VCSCTGVPRQ CYKWGNGGWQ  240
SSCCTTSLSV YPLPQMPNKR HARMGGRKMS GSVFSRLLTR LAASDHDLSI PVDLKDHWAK  300
HGTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088547.11e-166protein BASIC PENTACYSTEINE4 isoform X1
RefseqXP_011088549.11e-166protein BASIC PENTACYSTEINE4 isoform X1
RefseqXP_011088550.11e-166protein BASIC PENTACYSTEINE4 isoform X1
RefseqXP_011088551.11e-166protein BASIC PENTACYSTEINE4 isoform X1
SwissprotQ8S8C61e-108BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A4D8YJH31e-179A0A4D8YJH3_SALSN; Uncharacterized protein
TrEMBLA0A4D9A1R01e-175A0A4D9A1R0_SALSN; Uncharacterized protein
STRINGXP_009804621.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128