PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100016150121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 253aa    MW: 28893.4 Da    PI: 7.6181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100016150121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.2e-131558144
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                                  +g W+++Ed++l++ + ++G g+W++I+   g+ R +k+c++rw
  Ote100016150121|100016150121 15 KGLWSPDEDLKLKNHIIKYGHGCWTSIPINAGLQRNGKSCRLRW 58
                                  678***************************************** PP
2Myb_DNA-binding285e-0957812348
                                  -HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                  +W+ I+++++ gRt++++k++w+ yl
  Ote100016150121|100016150121 57 RWSQISHHLP-GRTDNEIKNHWHAYL 81
                                  4*********.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-16958IPR009057Homeodomain-like
PROSITE profilePS5129416.1641066IPR017930Myb domain
SuperFamilySSF466892.33E-161377IPR009057Homeodomain-like
SMARTSM007175.2E-141483IPR001005SANT/Myb domain
PfamPF002495.4E-111558IPR001005SANT/Myb domain
CDDcd001673.09E-111881No hitNo description
Gene3DG3DSA:1.10.10.603.2E-115988IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGYKPSEKPK QKYKKGLWSP DEDLKLKNHI IKYGHGCWTS IPINAGLQRN GKSCRLRWSQ  60
ISHHLPGRTD NEIKNHWHAY LKKRVSKMAE EVDGKSKKFH GLKEISPPSF KLTRQNSGFE  120
SLDNTEASLT DTDQSMQLSE QKREDQICNL PKILFAEWLS LDRFNGQNQG CSRVAADSRF  180
TFDYGTAISE DSSVQGHQLN EKLIGNEMHN KSNLFSMNGI VHSPFGLGDQ ISESGLIDYF  240
PGEFDIYCDD LYM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549243.15e-95transcription factor LAF1-like
TrEMBLA0A059PSP55e-97A0A059PSP5_SALMI; MYB-related transcription factor
STRINGPGSC0003DMT4000370802e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154