 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100015190091 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
| Family | Trihelix | ||||||||
| Protein Properties | Length: 317aa MW: 35079.4 Da PI: 5.1272 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 38.9 | 2.3e-12 | 43 | 80 | 1 | 38 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm 38
rW++qe+laL+++r+em+ ++r+++lk+plWe+vsk
Ote100015190091|100015190091 43 RWPRQETLALLKIRSEMDATFRDASLKGPLWEDVSKTY 80
8**********************************976 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 317 aa Download sequence Send to blast |
MMLGVSGLMS GGGSGGSSEL GTSSSAPVGG GVEEHDRIGG GNRWPRQETL ALLKIRSEMD 60 ATFRDASLKG PLWEDVSKTY SNTIKEQKEQ XSDGKSYRFF DQLEAFENTY NHFTPPAAAT 120 AAPVNPPPIP IPSNVDNTTV PSESPVPLSV IPPINSSFQP SQPQLQSQST SSSTSSDEDL 180 QPRSRKRKWK DQLERLMTDV VQKQDELQKK FLEALEKRER DRIAREEAWR SQEIAMINRE 240 HDLLAQERSI AAARDAAVIA FLQKVTSQTD FQIPQPQSQS VEAAKPTPDR DNGGDDQISG 300 NSSXXXXXXX XXRRWKP |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_022885875.1 | 5e-72 | trihelix transcription factor GT-2-like | ||||
| Refseq | XP_022885876.1 | 5e-72 | trihelix transcription factor GT-2-like | ||||
| Swissprot | Q39117 | 3e-50 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
| TrEMBL | A0A4D8ZZY4 | 6e-79 | A0A4D8ZZY4_SALSN; Uncharacterized protein | ||||
| STRING | Solyc12g056510.1.1 | 1e-65 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2402 | 24 | 59 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|