PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100012900031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 497aa MW: 55576.7 Da PI: 10.2918

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100012900031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.4	5.8e-07	9	43	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W t+Ed++l av ++G+++W+ +a+++ Rtl+ Ote100012900031\|100012900031 9 VWGTWEDLILGGAVLRHGTRDWNVVASEIR-ARTLY 43 5*****************************.99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00297	4.6E-14	285	393	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	7.7E-14	287	431	IPR001487	Bromodomain
SuperFamily	SSF47370	2.09E-15	294	393	IPR001487	Bromodomain
Pfam	PF00439	3.4E-10	298	377	IPR001487	Bromodomain
PROSITE profile	PS50014	9.711	304	374	IPR001487	Bromodomain
CDD	cd04369	3.60E-6	309	388	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MGAEAVAPVW GTWEDLILGG AVLRHGTRDW NVVASEIRAR TLYPYAFTPQ DVLFSLLPSS 60 FEIFSSDLCP NQSSCVHQFT LYACKKRYED LQKRFSGSTA WFEELRKQRV AELKQELAKS 120 ENSIGSLESK IKSLEGKKQH CKQADHGSSE TESHLPALDS EATESISRQT SNGENSVSSF 180 TKETSTRSSW LCDNEHQAAE TDTKPSTSVC SDQGKAALST DKFPELGYGH GVVVRKKRGQ 240 RKRKDCSGGV KERSVCESDN LGSSNAVSTA KQEASTHECV RMRNSGTNNH HGRENLIKIF 300 ESVAESEPAA VFRHRMDSQK RARYRRVIRQ HVDIGTIKSR IVGHSIRSVK DLFRDLLLLA 360 NNVLVFYSRR TREYKSAISL RQLVMKEYRL HCRGHCNEAT SAFIPCNPPV RPRTARPHPR 420 PPPSKDKAAP EKASSSENVV PATPVESGKQ CETGFSVSRQ SSLKAKKGLK RPAKLKSELG 480 DPPRKNATVK QRKRVRR

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MGAEAVAPVW GTWEDLILGG AVLRHGTRDW NVVASEIRAR TLYPYAFTPQ DVLFSLLPSS  60
FEIFSSDLCP NQSSCVHQFT LYACKKRYED LQKRFSGSTA WFEELRKQRV AELKQELAKS  120
ENSIGSLESK IKSLEGKKQH CKQADHGSSE TESHLPALDS EATESISRQT SNGENSVSSF  180
TKETSTRSSW LCDNEHQAAE TDTKPSTSVC SDQGKAALST DKFPELGYGH GVVVRKKRGQ  240
RKRKDCSGGV KERSVCESDN LGSSNAVSTA KQEASTHECV RMRNSGTNNH HGRENLIKIF  300
ESVAESEPAA VFRHRMDSQK RARYRRVIRQ HVDIGTIKSR IVGHSIRSVK DLFRDLLLLA  360
NNVLVFYSRR TREYKSAISL RQLVMKEYRL HCRGHCNEAT SAFIPCNPPV RPRTARPHPR  420
PPPSKDKAAP EKASSSENVV PATPVESGKQ CETGFSVSRQ SSLKAKKGLK RPAKLKSELG  480
DPPRKNATVK QRKRVRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830514.1	1e-178	PREDICTED: uncharacterized protein LOC105951610
TrEMBL	A0A4D8Y3N0	0.0	A0A4D8Y3N0_SALSN; Uncharacterized protein
TrEMBL	A0A4D9BAR9	0.0	A0A4D9BAR9_SALSN; Uncharacterized protein
STRING	Migut.H01498.1.p	1e-178	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5534	19	24