PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100012360072

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

CAMTA

Protein Properties

Length: 918aa MW: 103512 Da PI: 6.7971

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100012360072	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.2	1.3e-52	31	147	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevly 82 +e ++rwl+++ei+aiL n+++++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e ++ Ote100012360072\|100012360072 31 EEaTSRWLRPNEIHAILSNHKHFTVHVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIH 111 45489************************************************************************** PP CG-1 83 cyYahseenptfqrrcywlLeeelekivlvhylevk 118 +yYah+e+nptf rrcywlL+++le+ivlvhy+e++ Ote100012360072\|100012360072 112 VYYAHGEDNPTFVRRCYWLLDKSLEHIVLVHYRETQ 147 *******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.864	26	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.4E-75	29	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-46	32	145	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.96E-5	491	553	IPR014756	Immunoglobulin E-set
SuperFamily	SSF52540	6.11E-6	715	820	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.163	754	780	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	16	769	791	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.98	773	799	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	792	814	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.725	793	817	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.001	794	814	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.6	872	894	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.986	874	902	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MEGNSVPSLL VGPEIHGFRT MEDLDFQNIL EEATSRWLRP NEIHAILSNH KHFTVHVKPM 60 NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN 120 PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPANSN SAISNPSAPR PLHEGSDSAV 180 DPMYYSSSMP VLERNDSMMI KDHAQRLHEI NTLDWDELLV AVDPNKHNSP QEGNTAGFEL 240 PNQYHTNSYN ISCTWAHESP GLFPASSGKL VSSYLPVIGW MSDLFWPVSL GVFGYQCVTC 300 LPTWHEFVPS FQLNDALSSN QVSPESSDIS EQVAWMNSVN FNIPNNLSYQ TVGNETTVSQ 360 ETRISGLVTL SGSGANSLVT DSSQSQDSFG NMTTHMIAES PESVDNHSLE SSLLNGHQSL 420 SYSLVDNHRP SPLGQIFNVT DITPTWALST EETKVLSSVT VFLSIGLSCW YASDNGMLNC 480 FVILVVGFFS DGHQHHADSK LYLACGDSIL PVEVVQRGVF RCLISPQAPG MVNLYMTFDG 540 HKPISQVLTF EFRAPMQPNG SISIENADNW KEFQLQMRLA HLLFPSSKDL NIYSTKSSQT 600 ALKEAKFFAK KTSHFSDGWE KMVAALLSVG AKANLVTDPT SQNPGGCTAA DLASINGYEG 660 LAAYLAEKAL VQQFEDMTLA GNVSGSLQTT TNESVNIGNF NEDELYLKDT LAAYRTAADA 720 AARIQAAFRE HSLKVQTQVI EASNTEIEAR NIVAAMKIQH AFRNYETRKK IVAAARIQHR 780 FRTWKIRKDF LNMRRQAIKI QAMFRGFQVR RQYRKICWSV GVLEKAILRW RLKRKGFRGL 840 QVEPTETMKD QNQDSDVEED FFKASRKQAE ERVERSVVRV QAMFRSRRAQ EEYRRMKLEC 900 SKATLEYEEF LHPDAEMG

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MEGNSVPSLL VGPEIHGFRT MEDLDFQNIL EEATSRWLRP NEIHAILSNH KHFTVHVKPM  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN  120
PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPANSN SAISNPSAPR PLHEGSDSAV  180
DPMYYSSSMP VLERNDSMMI KDHAQRLHEI NTLDWDELLV AVDPNKHNSP QEGNTAGFEL  240
PNQYHTNSYN ISCTWAHESP GLFPASSGKL VSSYLPVIGW MSDLFWPVSL GVFGYQCVTC  300
LPTWHEFVPS FQLNDALSSN QVSPESSDIS EQVAWMNSVN FNIPNNLSYQ TVGNETTVSQ  360
ETRISGLVTL SGSGANSLVT DSSQSQDSFG NMTTHMIAES PESVDNHSLE SSLLNGHQSL  420
SYSLVDNHRP SPLGQIFNVT DITPTWALST EETKVLSSVT VFLSIGLSCW YASDNGMLNC  480
FVILVVGFFS DGHQHHADSK LYLACGDSIL PVEVVQRGVF RCLISPQAPG MVNLYMTFDG  540
HKPISQVLTF EFRAPMQPNG SISIENADNW KEFQLQMRLA HLLFPSSKDL NIYSTKSSQT  600
ALKEAKFFAK KTSHFSDGWE KMVAALLSVG AKANLVTDPT SQNPGGCTAA DLASINGYEG  660
LAAYLAEKAL VQQFEDMTLA GNVSGSLQTT TNESVNIGNF NEDELYLKDT LAAYRTAADA  720
AARIQAAFRE HSLKVQTQVI EASNTEIEAR NIVAAMKIQH AFRNYETRKK IVAAARIQHR  780
FRTWKIRKDF LNMRRQAIKI QAMFRGFQVR RQYRKICWSV GVLEKAILRW RLKRKGFRGL  840
QVEPTETMKD QNQDSDVEED FFKASRKQAE ERVERSVVRV QAMFRSRRAQ EEYRRMKLEC  900
SKATLEYEEF LHPDAEMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021774123.1	0.0	calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	1e-118	CMTA5_ARATH; Calmodulin-binding transcription activator 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]