PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100012360071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

CAMTA

Protein Properties

Length: 1034aa MW: 117008 Da PI: 6.8292

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100012360071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	151	2.7e-47	31	167	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg..... 77 +e ++rwl+++ei+aiL n+++++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LK + Ote100012360071\|100012360071 31 EEaTSRWLRPNEIHAILSNHKHFTVHVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKENLniigp 111 45489*******************************************************************8878999 PP CG-1 78 ...............vevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 e +++yYah+e+nptf rrcywlL+++le+ivlvhy+e++ Ote100012360071\|100012360071 112 lvcyciilvvmkvgnEERIHVYYAHGEDNPTFVRRCYWLLDKSLEHIVLVHYRETQ 167 *****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.964	26	172	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.4E-65	29	167	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.5E-25	32	105	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.3E-15	122	165	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.38E-5	511	573	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.81E-17	666	781	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.9E-17	668	785	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.38E-18	669	784	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.3	677	793	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.9E-7	695	782	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.2E-4	722	751	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.194	722	754	IPR002110	Ankyrin repeat
SMART	SM00248	1900	761	790	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	9.03E-6	831	936	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.163	870	896	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	16	885	907	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.98	889	915	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	908	930	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.725	909	933	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0011	910	930	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.6	988	1010	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.986	990	1018	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MEGNSVPSLL VGPEIHGFRT MEDLDFQNIL EEATSRWLRP NEIHAILSNH KHFTVHVKPM 60 NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKENLNIIG PLVCYCIILV 120 VMKVGNEERI HVYYAHGEDN PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPANSN 180 SAISNPSAPR PLHEGSDSAV DPMYYSSSMP VLERNDSMMI KDHAQRLHEI NTLDWDELLV 240 AVDPNKHNSP QEGNTAGFEL PNQYHTNSYN ISCTWAHESP GLFPASSGKL VSSYLPVIGW 300 MSDLFWPVSL GVFGYQCVTC LPTWHEFVPS FQLNDALSSN QVSPESSDIS EQVAWMNSVN 360 FNIPNNLSYQ TVGNETTVSQ ETRISGLVTL SGSGANSLVT DSSQSQDSFG NMTTHMIAES 420 PESVDNHSLE SSLLNGHQSL SYSLVDNHRP SPLGQIFNVT DITPTWALST EETKVLSSVT 480 VFLSIGLSCW YASDNGMLNC FVILVVGFFS DGHQHHADSK LYLACGDSIL PVEVVQRGVF 540 RCLISPQAPG MVNLYMTFDG HKPISQVLTF EFRAPMQPNG SISIENADNW KEFQLQMRLA 600 HLLFPSSKDL NIYSTKSSQT ALKEAKFFAK KTSHFSDGWF YLSKMIEETK MPFPQAKDRL 660 FDLTLQNRLV EWLLEKVATG CKITERDEQG QGVIHLCAIL GYTWAVYPFS WSGLSLDYRD 720 KFGWTALHWA AYYGREKMVA ALLSVGAKAN LVTDPTSQNP GGCTAADLAS INGYEGLAAY 780 LAEKALVQQF EDMTLAGNVS GSLQTTTNES VNIGNFNEDE LYLKDTLAAY RTAADAAARI 840 QAAFREHSLK VQTQVIEASN TEIEARNIVA AMKIQHAFRN YETRKKIVAA ARIQHRFRTW 900 KIRKDFLNMR RQAIKIQAMF RGFQVRRQYR KICWSVGVLE KAILRWRLKR KGFRGLQVEP 960 TETMKDQNQD SDVEEDFFKA SRKQAEERVE RSVVRVQAMF RSRRAQEEYR RMKLECSKAT 1020 LEYEEFLHPD AEMG

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MEGNSVPSLL VGPEIHGFRT MEDLDFQNIL EEATSRWLRP NEIHAILSNH KHFTVHVKPM  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKENLNIIG PLVCYCIILV  120
VMKVGNEERI HVYYAHGEDN PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPANSN  180
SAISNPSAPR PLHEGSDSAV DPMYYSSSMP VLERNDSMMI KDHAQRLHEI NTLDWDELLV  240
AVDPNKHNSP QEGNTAGFEL PNQYHTNSYN ISCTWAHESP GLFPASSGKL VSSYLPVIGW  300
MSDLFWPVSL GVFGYQCVTC LPTWHEFVPS FQLNDALSSN QVSPESSDIS EQVAWMNSVN  360
FNIPNNLSYQ TVGNETTVSQ ETRISGLVTL SGSGANSLVT DSSQSQDSFG NMTTHMIAES  420
PESVDNHSLE SSLLNGHQSL SYSLVDNHRP SPLGQIFNVT DITPTWALST EETKVLSSVT  480
VFLSIGLSCW YASDNGMLNC FVILVVGFFS DGHQHHADSK LYLACGDSIL PVEVVQRGVF  540
RCLISPQAPG MVNLYMTFDG HKPISQVLTF EFRAPMQPNG SISIENADNW KEFQLQMRLA  600
HLLFPSSKDL NIYSTKSSQT ALKEAKFFAK KTSHFSDGWF YLSKMIEETK MPFPQAKDRL  660
FDLTLQNRLV EWLLEKVATG CKITERDEQG QGVIHLCAIL GYTWAVYPFS WSGLSLDYRD  720
KFGWTALHWA AYYGREKMVA ALLSVGAKAN LVTDPTSQNP GGCTAADLAS INGYEGLAAY  780
LAEKALVQQF EDMTLAGNVS GSLQTTTNES VNIGNFNEDE LYLKDTLAAY RTAADAAARI  840
QAAFREHSLK VQTQVIEASN TEIEARNIVA AMKIQHAFRN YETRKKIVAA ARIQHRFRTW  900
KIRKDFLNMR RQAIKIQAMF RGFQVRRQYR KICWSVGVLE KAILRWRLKR KGFRGLQVEP  960
TETMKDQNQD SDVEEDFFKA SRKQAEERVE RSVVRVQAMF RSRRAQEEYR RMKLECSKAT  1020
LEYEEFLHPD AEMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840434.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2G9H5Q9	0.0	A0A2G9H5Q9_9LAMI; Uncharacterized protein
STRING	Migut.N00052.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]