PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100012231211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19295.5 Da PI: 9.2518 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.6 | 2.1e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + Ote100012231211|100012231211 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 33.5 | 1.7e-12 | 82 | 149 | 6 | 72 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnel 72 k+++ +++ +l++e+ Lk eie+Lq+ +R + G + +++sl+eL+ Le++Le+ + ++Rs K Ote100012231211|100012231211 82 AKDKQVSNYGELKEEIILLKHEIETLQKGLRYISGGGTpGTMSLNELNVLEKHLETWIYQVRSAKVCS 149 556788999************************98775489**********************99655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-28 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.955 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.26E-39 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 2.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-11 | 86 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.637 | 90 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60 GCMQSLIEKY TKYTKEIPAE EAKDKQVSNY GELKEEIILL KHEIETLQKG LRYISGGGTP 120 GTMSLNELNV LEKHLETWIY QVRSAKVCSY TYHMHLHYDK IKYEIEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020555041.1 | 4e-75 | agamous-like MADS-box protein AGL12 isoform X2 | ||||
Swissprot | A2YQK9 | 2e-55 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 2e-55 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A4D8Z141 | 5e-84 | A0A4D8Z141_SALSN; Uncharacterized protein | ||||
STRING | Migut.C01339.1.p | 3e-74 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9810 | 20 | 24 |
Publications ? help Back to Top | |||
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