PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100012231081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 711aa    MW: 79981.7 Da    PI: 8.6944
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100012231081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.61.9e-24958150
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  Ote100012231081|100012231081  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                                  79*********************************************965 PP
2K-box516.1e-1882174697
                         K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                                    k+++ +++ +l++e+  Lk eie+Lq+ +R + G +  +++sl+eL+ Le++Le+ + ++Rs K++++ ++i+ l++ke 
  Ote100012231081|100012231081  82 AKDKQVSNYGELKEEIILLKHEIETLQKGLRYISGGGTpGTMSLNELNVLEKHLETWIYQVRSAKMDIMAQEIQLLKNKEG 162
                                   456788999************************98775489**************************************** PP

                         K-box  86 elqeenkaLrkk 97 
                                    lq +nk L++k
  Ote100012231081|100012231081 163 ILQAANKHLQEK 174
                                   *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-27174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
CDDcd002652.66E-37275No hitNo description
PRINTSPR004049.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-211056IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-1986174IPR002487Transcription factor, K-box
PROSITE profilePS5129711.67890181IPR002487Transcription factor, K-box
PROSITE profilePS508969.804179211IPR006594LIS1 homology motif
SMARTSM006672.4E-4179211IPR006594LIS1 homology motif
SuperFamilySSF638291.41E-5276425No hitNo description
Gene3DG3DSA:2.130.10.102.6E-52371676IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003206.4E-4371411IPR001680WD40 repeat
PROSITE profilePS5029426.261379533IPR017986WD40-repeat-containing domain
SuperFamilySSF509787.69E-51380675IPR017986WD40-repeat-containing domain
PfamPF004002.1E-4386411IPR001680WD40 repeat
CDDcd002002.71E-41388675No hitNo description
PROSITE profilePS5008210.241391411IPR001680WD40 repeat
SMARTSM003202.9E-8422461IPR001680WD40 repeat
PROSITE profilePS5008216.123429470IPR001680WD40 repeat
PfamPF004009.7E-6432460IPR001680WD40 repeat
SMARTSM003201.1E-6464504IPR001680WD40 repeat
PfamPF004007.7E-4465502IPR001680WD40 repeat
PROSITE profilePS5008210.475472513IPR001680WD40 repeat
SMARTSM0032017507593IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008380Biological ProcessRNA splicing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GCMQSLIEKY TKYTKEIPAE EAKDKQVSNY GELKEEIILL KHEIETLQKG LRYISGGGTP  120
GTMSLNELNV LEKHLETWIY QVRSAKMDIM AQEIQLLKNK EGILQAANKH LQEKNGVLHS  180
KSVIKIVLQF CKENSLHQTF QTLQNECQVS LNTVDSHETF IADINSGRWD AILPQVAQLK  240
LPRKKLEDLY EQVLNCDKDI MQQFKFKIVL EMIELREIDT ARAILRQTQS LVQGLPGSIF  300
SSVFRLIISS SQNLYASVAA EVSVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA  360
AMKQDVEDMY PTTLGHTIKF GKNSHPECAW FSPDGQFLVS CSVDGFIEVW DHISGKLKKD  420
LQYQADETFM MHDEAVLCVD FSRDSEMLAS GSQDGKIKVW RIRTGQCLRR LERAHSEGVT  480
SVSFSRDGTQ LLSTSFDSTA RIHGMKSGKM LKEFRGHSSY VNDAIFTADG SRVWDVKTTD  540
CLQTFKPPXX XXXXSSKSMY AGGDASVNSV HLFPKNTDHI VVCNKTSSIY IMTLQGQVVK  600
SFSSGKREGG DFMAACVSTK GEWXXXXXXX VKMKNLYCFS YQSGKLEHLM KVHEKDVIGI  660
AHHPHINLIA TYGEDXXXXX XXXXIMGPQA LTIALRRLAF ATAPVSLTKP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5o9z_L0.01786755505WD40 repeat-containing protein SMU1
6ahd_Y0.01786755505WD40 repeat-containing protein SMU1
6q8f_A0.01786756506WD40 repeat-containing protein SMU1
6q8f_B0.01786756506WD40 repeat-containing protein SMU1
6q8i_A0.01786756506WD40 repeat-containing protein SMU1
6q8i_B0.01786756506WD40 repeat-containing protein SMU1
6q8i_E0.01786756506WD40 repeat-containing protein SMU1
6q8i_F0.01786756506WD40 repeat-containing protein SMU1
6q8i_I0.01786756506WD40 repeat-containing protein SMU1
6q8i_J0.01786756506WD40 repeat-containing protein SMU1
6q8i_M0.01786756506WD40 repeat-containing protein SMU1
6q8i_N0.01786756506WD40 repeat-containing protein SMU1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development. Required for proper accumulation of SMU2. {ECO:0000269|PubMed:19734266}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854988.10.0PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1
SwissprotQ8W1170.0SMU1_ARATH; Suppressor of mec-8 and unc-52 protein homolog 1
TrEMBLA0A4D8Z2P10.0A0A4D8Z2P1_SALSN; WD40 repeat-containing protein SMU1
STRINGMigut.C01340.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Zhang Y, et al.
    Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.
    Plant Cell, 2008. 20(6): p. 1437-55
    [PMID:18552200]
  3. Chung T,Wang D,Kim CS,Yadegari R,Larkins BA
    Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development.
    Plant Physiol., 2009. 151(3): p. 1498-512
    [PMID:19734266]
  4. Kanno T,Lin WD,Fu JL,Matzke AJM,Matzke M
    A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in Arabidopsis thaliana.
    RNA, 2017. 23(7): p. 1068-1079
    [PMID:28373290]