PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100012230151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 319aa    MW: 36316 Da    PI: 10.1174
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100012230151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.4e-14151193345
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                                   i +++ r  tf kR+ g++KK +EL +LCd+e++ i++ ++g+
  Ote100012230151|100012230151 151 IADERTRRETFKKRKSGLFKKLNELKTLCDVEACGIVINEDGT 193
                                   778899999*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF886979.94E-1447147IPR015947PUA-like domain
PfamPF021901.4E-648237IPR003111ATP-dependent protease La (LON), substrate-binding domain
SMARTSM004324.2E-12135200IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.675141192IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-7143163IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-18145233IPR002100Transcription factor, MADS-box
CDDcd002661.64E-20146224No hitNo description
PfamPF003199.9E-16151193IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-7163178IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-7178199IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0004176Molecular FunctionATP-dependent peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MIAIIPNPSL IAPLNINNAH SSFASPLNSP FLRRRRRRFQ VQASSLVLPL LPFPVDQVLI  60
PSEVKTLHLY EARYIALLEE SLFQQNKVFV HFVLDPIGFG DTSLEASFAA RYGCLVTIEK  120
VEQLEIGALV LIRGVGRVKV LEFEQIKYEL IADERTRRET FKKRKSGLFK KLNELKTLCD  180
VEACGIVINE DGTQSEVWPS MHVTSQVVRR FLNLPSSSQT NNMVGQSGFL RQNLSRISKN  240
LDKETRKVQS LEKELLLAEF LSKEEVDVSS SNELHGMLRL LDRKIEMVDR KISDIGPSSS  300
TMARRRNREN YHGKGKRPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854900.13e-62PREDICTED: uncharacterized protein LOC105974361
TrEMBLA0A4D8YJV51e-138A0A4D8YJV5_SALSN; Uncharacterized protein
STRINGMigut.C01325.1.p1e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA858166