PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100011400021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MIKC_MADS

Protein Properties

Length: 191aa MW: 21728.9 Da PI: 9.5178

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100011400021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+++++++s t+kl+ey+s Ote100011400021\|100011400021 9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISGTQKLHEYIS 59 68***********************************************86 PP
2	K-box	46.7	1.4e-16	58	126	31	99
K-box 31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++ +++Ge+L+ L ++++ +L +++++s+k iR++K+++l + i++ +kk ++++e+ k L +++ Ote100011400021\|100011400021 58 ISPTIAQRMGESLNGLGYEQMVNLIEDMDNSMKLIRETKYKVLGNRIQTGKKKLRNVEEIYKGLVLQFD 126 5567889****************************************************9999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.389	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.38E-34	2	60	No hit	No description
SuperFamily	SSF55455	4.32E-29	3	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	9.398	41	131	IPR002487	Transcription factor, K-box
Pfam	PF01486	3.7E-9	60	123	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKISILMISG TQKLHEYISP 60 TIAQRMGESL NGLGYEQMVN LIEDMDNSMK LIRETKYKVL GNRIQTGKKK LRNVEEIYKG 120 LVLQFDAPHD DPHYGLVENE GDYESVLGFP HGVQRIVALR QTANHLPHHH HHTSFHSGTG 180 ASDLTTFALL E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-15	1	59	1	59	MEF2C
5f28_B	2e-15	1	59	1	59	MEF2C
5f28_C	2e-15	1	59	1	59	MEF2C
5f28_D	2e-15	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001306615.1	3e-95	floral homeotic protein DEFICIENS
Swissprot	P23706	2e-95	DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBL	A0A4D8ZKS2	5e-96	A0A4D8ZKS2_SALSN; MADS-box transcription factor, plant
TrEMBL	Q6QVY0	5e-96	Q6QVY0_SALCC; Deficiens
STRING	Migut.N03130.1.p	2e-84	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2314	24	51

Publications ? help Back to Top
Schwarz-Sommer Z, et al. Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development. EMBO J., 1992. 11(1): p. 251-63 [PMID:1346760] Sommer H, et al. Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J., 1990. 9(3): p. 605-13 [PMID:1968830] Gallois JL, et al. Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 2013. 526(2): p. 299-308 [PMID:23747397] Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H Multiple interactions amongst floral homeotic MADS box proteins. EMBO J., 1996. 15(16): p. 4330-43 [PMID:8861961]