PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100010730081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21949.7 Da PI: 8.2125 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 161.7 | 5.7e-50 | 2 | 144 | 5 | 158 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 +++eq+Cy+ CnfCn ilavsvP +s+f vvtvrCGhCt+l svn+a a q l + + ++ +++e+ +++ Ote100010730081|100010730081 2 EAAEQLCYIPCNFCNIILAVSVPCSSIFDVVTVRCGHCTNLWSVNMAAAFQCLQPPWQ------DFQVPSYGSAEHRVEMG 76 5789*****************************************9998887766554......33455556666666555 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaak 158 +++ +++ +++ + + p v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aa Ote100010730081|100010730081 77 SSSRWNPRMQIQPP-----SFIHKPDHRLVNRPPEKRQRVPSAYNQFIKEEIQRIKAKNPDISHREAFSTAAX 144 55554444444443.....333444445589****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-57 | 3 | 143 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-6 | 93 | 140 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 2.83E-4 | 110 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEAAEQLCYI PCNFCNIILA VSVPCSSIFD VVTVRCGHCT NLWSVNMAAA FQCLQPPWQD 60 FQVPSYGSAE HRVEMGSSSR WNPRMQIQPP SFIHKPDHRL VNRPPEKRQR VPSAYNQFIK 120 EEIQRIKAKN PDISHREAFS TAAXXXXLGT FSSYPFWTNA GXXATKLKQL TSYFVMSVFV 180 ATSFDCFVDV FLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078402.1 | 2e-76 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 6e-63 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A2G9GBC8 | 1e-75 | A0A2G9GBC8_9LAMI; Uncharacterized protein | ||||
STRING | XP_002527201.1 | 2e-72 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Publications ? help Back to Top | |||
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