PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100009200061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | SRS | ||||||||
Protein Properties | Length: 202aa MW: 22188.9 Da PI: 7.9504 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 186.8 | 8.2e-58 | 4 | 141 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84 +++C dCGnqakkdC+h+RCRtCCk+rgf C+thvkstWvpaa+rr+r qq+aa ++++ kr re+ ++ Ote100009200061|100009200061 4 EGINCADCGNQAKKDCEHMRCRTCCKNRGFPCQTHVKSTWVPAARRRHRLQQQAAV--------RDENLKRLREN--PASG 74 5689*********************************************9999887........34455666654..2333 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + + + + + + ++P+ev+s+avfrcvrvss+d++ee laY+tav+igGhvfkGiLydqG++ Ote100009200061|100009200061 75 SHGEFLVCNL--YSIVMGFEFPSEVNSAAVFRCVRVSSMDEAEETLAYHTAVNIGGHVFKGILYDQGPD 141 3333333333..33344556***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-55 | 5 | 141 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.3E-26 | 8 | 49 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.3E-24 | 93 | 140 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSGEGINCAD CGNQAKKDCE HMRCRTCCKN RGFPCQTHVK STWVPAARRR HRLQQQAAVR 60 DENLKRLREN PASGSHGEFL VCNLYSIVMG FEFPSEVNSA AVFRCVRVSS MDEAEETLAY 120 HTAVNIGGHV FKGILYDQGP DIGRESSSAY VVSQQNLTAV AAPPSSTATT TNVNASILDP 180 SIYPNQMSSF PSNTQFFLPP RP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022856966.1 | 7e-72 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9LQZ5 | 6e-64 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A4D8Y952 | 2e-73 | A0A4D8Y952_SALSN; Uncharacterized protein | ||||
STRING | Migut.N03122.1.p | 1e-69 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Publications ? help Back to Top | |||
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