PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100009200061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SRS
Protein Properties Length: 202aa    MW: 22188.9 Da    PI: 7.9504
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100009200061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702186.88.2e-5841414153
                        DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84 
                                    +++C dCGnqakkdC+h+RCRtCCk+rgf C+thvkstWvpaa+rr+r qq+aa         ++++ kr re+   ++ 
  Ote100009200061|100009200061   4 EGINCADCGNQAKKDCEHMRCRTCCKNRGFPCQTHVKSTWVPAARRRHRLQQQAAV--------RDENLKRLREN--PASG 74 
                                   5689*********************************************9999887........34455666654..2333 PP

                        DUF702  85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                   +  +  + +    + +   ++P+ev+s+avfrcvrvss+d++ee laY+tav+igGhvfkGiLydqG++
  Ote100009200061|100009200061  75 SHGEFLVCNL--YSIVMGFEFPSEVNSAAVFRCVRVSSMDEAEETLAYHTAVNIGGHVFKGILYDQGPD 141
                                   3333333333..33344556***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-555141IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.3E-26849IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.3E-2493140IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSGEGINCAD CGNQAKKDCE HMRCRTCCKN RGFPCQTHVK STWVPAARRR HRLQQQAAVR  60
DENLKRLREN PASGSHGEFL VCNLYSIVMG FEFPSEVNSA AVFRCVRVSS MDEAEETLAY  120
HTAVNIGGHV FKGILYDQGP DIGRESSSAY VVSQQNLTAV AAPPSSTATT TNVNASILDP  180
SIYPNQMSSF PSNTQFFLPP RP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856966.17e-72protein SHI RELATED SEQUENCE 1-like
SwissprotQ9LQZ56e-64SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A4D8Y9522e-73A0A4D8Y952_SALSN; Uncharacterized protein
STRINGMigut.N03122.1.p1e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]