PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100009080031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bZIP
Protein Properties Length: 385aa    MW: 41099.4 Da    PI: 6.9508
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100009080031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.8e-10263287125
                                   XXXXCHHHCHHHHHHHHHHHHHHHH CS
                        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKk 25 
                                   e+elkr++rkq+NRe+ArrsR+RK+
  Ote100009080031|100009080031 263 ERELKRQKRKQSNRESARRSRLRKQ 287
                                   89**********************9 PP
2bZIP_131.92.8e-103123512463
                                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        bZIP_1  24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                   K ae+eeL+ kv++L +eN++L++el++l++e++k +se+
  Ote100009080031|100009080031 312 KIAECEELQHKVETLNTENRSLRDELQRLSEECEKITSEN 351
                                   779**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.8E-30196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.7E-7114231No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-19258348No hitNo description
PfamPF001701.6E-8263288IPR004827Basic-leucine zipper domain
SMARTSM003386.6E-14263353IPR004827Basic-leucine zipper domain
CDDcd147021.16E-20268344No hitNo description
PROSITE patternPS000360270285IPR004827Basic-leucine zipper domain
PfamPF001702.9E-7312351IPR004827Basic-leucine zipper domain
SuperFamilySSF580504.05E-5314361IPR032038Adenomatous polyposis coli, N-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGTGEESTPS KSTKPTSTTQ EAPVTPTTPM YPDWSTSMQA FYGAGGAQPF FASTVASPPP  60
PPYLWGGQHP MMPPYGTPVP YPALYPPGGI YAHPNMAAVA PGAVHGTAES DGKERLSSKK  120
TKGSSVNHGM IGGKAVDGGK TASGSGNDGG GTHRCAESGS EGSSDASDEN NNQDFSAAKK  180
GSFDQMLADG ANAQNNGIPT NFPNSVHGNP VGSVPATNLN IGMDLWNTTP AGSGPMKLRP  240
NSVGVSQAVV SSGMMNDQWT QDERELKRQK RKQSNRESAR RSRLRKQGMC FVALSASVRV  300
WRNYPIPVPQ YKIAECEELQ HKVETLNTEN RSLRDELQRL SEECEKITSE NNSIKEELTR  360
LLGADAVANF ENGNSDTHES KVTVR
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097214.10.0G-box-binding factor 1-like isoform X1
SwissprotP427748e-98GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A4D9BV770.0A0A4D9BV77_SALSN; Plant G-box-binding factor
TrEMBLA0A4D9C5570.0A0A4D9C557_SALSN; Plant G-box-binding factor
STRINGXP_009590476.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]