PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100008310041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 405aa MW: 44560.4 Da PI: 8.2832

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100008310041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.8	1.3e-09	128	169	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k ++++NReAArrsR RKk++++eLe + L + +aL+ Ote100008310041\|100008310041 128 KELVKLAQNREAARRSRMRKKEYVKELECSQQRLAQLDHALR 169 66789**********************988888777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-4	124	188	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.531	126	170	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-7	128	170	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-7	128	172	No hit	No description
PROSITE pattern	PS00036	0	132	146	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-8	132	176	No hit	No description
Pfam	PF14144	6.1E-10	210	264	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MRGDGIGKDG DVAELLQSAG NVFHDLDTPD ITTICSIYNG IKASNVSVES SNSQFGGIPK 60 SCGSAVEKGH FLMDKGGNIQ PSGTSRNAHF YSSQSETLTN NDARKNQSAG LVAGDSRDQS 120 KGRVRGQKEL VKLAQNREAA RRSRMRKKEY VKELECSQQR LAQLDHALRR GRKQVSSRFS 180 GYQKNSISGS GSVAFDTDQA SWAEEHQTLI DDLRWGLNSD AGDTQLHLLV DAVISHYDQL 240 LLIKKSGAKT DMFHILSGVW LSPVCTATIN QDPKFHYELL IPPSQVLEKK IQPLTEQQLV 300 GICNLQQSCQ EAEDALSQGM EALQLSLVET LSPTSDYMTQ MAVAMTKIAT IQNFLNQADL 360 LRLHTLQQLQ RILTTRQAAC ALLAVNNYKS KLRALSSLWL ALPKG

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MRGDGIGKDG DVAELLQSAG NVFHDLDTPD ITTICSIYNG IKASNVSVES SNSQFGGIPK  60
SCGSAVEKGH FLMDKGGNIQ PSGTSRNAHF YSSQSETLTN NDARKNQSAG LVAGDSRDQS  120
KGRVRGQKEL VKLAQNREAA RRSRMRKKEY VKELECSQQR LAQLDHALRR GRKQVSSRFS  180
GYQKNSISGS GSVAFDTDQA SWAEEHQTLI DDLRWGLNSD AGDTQLHLLV DAVISHYDQL  240
LLIKKSGAKT DMFHILSGVW LSPVCTATIN QDPKFHYELL IPPSQVLEKK IQPLTEQQLV  300
GICNLQQSCQ EAEDALSQGM EALQLSLVET LSPTSDYMTQ MAVAMTKIAT IQNFLNQADL  360
LRLHTLQQLQ RILTTRQAAC ALLAVNNYKS KLRALSSLWL ALPKG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077152.1	1e-130	transcription factor HBP-1b(c38)-like
Swissprot	P23923	5e-96	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A4D9A4X8	1e-118	A0A4D9A4X8_SALSN; Transcription factor TGA
STRING	VIT_01s0011g03230.t01	1e-114	(Vitis vinifera)

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]