PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100008140071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 321aa MW: 35429.3 Da PI: 6.2318

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100008140071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	183.4	1.6e-56	27	204	3	185
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 + L+++Ae +++g+ +laq +Larl+++ sp gdp+qR+a+y +eAL+ l++ ++ p+s+ s+ + + ++ a+k Ote100008140071\|100008140071 27 DHLFKAAELLQTGNPSLAQGILARLNHHLSPIGDPFQRAAFYCKEALQLLLHN-----NNTTPVSDLSPLSLVLKIGAYKS 102 689************************************************.....77788888888889***** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164 fsevsPi+ f+++t+Nqa+lea+eg +r+Hi+Dfdi++G+QW++L+q+La R++g p lRiT+++sp++++ el+ t+e+ Ote100008140071\|100008140071 103 FSEVSPIIDFANFTCNQALLEALEGFDRIHIVDFDIGYGGQWASLMQELALRNGGGPALRITALVSPATHNPLELSLTREN 183 ***************************************************************************** PP GRAS 165 LakfAeelgvpfefnvlvakr 185 L ++A+e+++ +e +++ +++ Ote100008140071\|100008140071 184 LIQYANEINIGLELDFMSTDS 204 ***********99975444 PP
2	GRAS	24.7	2.6e-08	285	321	339	374
GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+l++ + g+ ve+++ slvl+W++++L+s+S+Wr Ote100008140071\|100008140071 285 LVLHRNGsIGGFGVEKKQSSLVLCWQRKELLSASVWR 321 56667776789*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.177	1	321	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-54	27	204	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.1E-6	285	321	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MQLLPNHPHL QGLKTSGGDE LPQLIMDHLF KAAELLQTGN PSLAQGILAR LNHHLSPIGD 60 PFQRAAFYCK EALQLLLHNN NTTPVSDLSP LSLVLKIGAY KSFSEVSPII DFANFTCNQA 120 LLEALEGFDR IHIVDFDIGY GGQWASLMQE LALRNGGGPA LRITALVSPA THNPLELSLT 180 RENLIQYANE INIGLELDFM STDSLRSGSC SLPLXXXXXX XXXXXWGDPP SWLPNQLSTA 240 SSFGASIRET TLTESCSLYG ERGQQRIEKL LVQPGMERXX XXXXLVLHRN GSIGGFGVEK 300 KQSSLVLCWQ RKELLSASVW R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-17	8	197	2	192	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090295.1	4e-95	scarecrow-like protein 6
Swissprot	O81316	1e-71	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A059C561	4e-95	A0A059C561_EUCGR; Uncharacterized protein
STRING	XP_010056373.1	3e-94	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]