PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100006780072
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 294aa    MW: 33416 Da    PI: 7.0528
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100006780072genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.1e-25949141
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                                  krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+ s
  Ote100006780072|100006780072  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVXS 49
                                  79*************************************98 PP
2K-box104.71.2e-341081941298
                         K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                   +   ++  e++kLk++i+ Lqr++Rh++GedL+s+s+k+Lq+Le qL+++lk+iR++Kn+ll+++i+elq+kek++qe+n 
  Ote100006780072|100006780072 108 ESPVNWVLEHSKLKARIDLLQRNHRHYMGEDLNSMSVKDLQNLELQLDTALKNIRTRKNQLLFDSISELQRKEKAIQEQNS 188
                                   55678999************************************************************************* PP

                         K-box  93 aLrkkl 98 
                                   +L kk+
  Ote100006780072|100006780072 189 MLAKKV 194
                                   ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.22E-23151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.6149IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-29160IPR002100Transcription factor, MADS-box
CDDcd002659.61E-30249No hitNo description
PRINTSPR004047.8E-22323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-211049IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.577110210IPR002487Transcription factor, K-box
PfamPF014866.0E-30112194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVXSL TRGSCLSIPL  60
ILVWILISLD LYEQHVCAGL DFAGMDRILE KYERYSFAER QLIANEPESP VNWVLEHSKL  120
KARIDLLQRN HRHYMGEDLN SMSVKDLQNL ELQLDTALKN IRTRKNQLLF DSISELQRKE  180
KAIQEQNSML AKKVXXXXXX XXXLVCCDES GCTKSTYDMI QIKEKEKEMG QWEPSTNTTA  240
LPPPPQPQYL MASQLPCLNI GGGGTYEEAS EATRNELDLT LDSLYSCHLG CFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-15104190397Developmental protein SEPALLATA 3
4ox0_B6e-15104190397Developmental protein SEPALLATA 3
4ox0_C6e-15104190397Developmental protein SEPALLATA 3
4ox0_D6e-15104190397Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547619.11e-110floral homeotic protein APETALA 1
SwissprotQ6E6S74e-98AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A4D9BPT21e-123A0A4D9BPT2_SALSN; MADS-box transcription factor, plant
STRINGMigut.E00037.1.p1e-108(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]