PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100006780071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 302aa    MW: 34377.2 Da    PI: 7.4163
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100006780071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.2e-25949141
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                                  krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+ s
  Ote100006780071|100006780071  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVXS 49
                                  79*************************************98 PP
2K-box105.46.8e-351202021698
                         K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                                   ++  e++kLk++i+ Lqr++Rh++GedL+s+s+k+Lq+Le qL+++lk+iR++Kn+ll+++i+elq+kek++qe+n +L k
  Ote100006780071|100006780071 120 NWVLEHSKLKARIDLLQRNHRHYMGEDLNSMSVKDLQNLELQLDTALKNIRTRKNQLLFDSISELQRKEKAIQEQNSMLAK 200
                                   7899***************************************************************************** PP

                         K-box  97 kl 98 
                                   k+
  Ote100006780071|100006780071 201 KV 202
                                   98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.6149IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-23151IPR002100Transcription factor, MADS-box
CDDcd002659.05E-30249No hitNo description
PRINTSPR004048.3E-22323IPR002100Transcription factor, MADS-box
PfamPF003196.8E-211049IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.747118218IPR002487Transcription factor, K-box
PfamPF014867.1E-29120202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVXSL TRGSCLSIPL  60
ILVWILISLD LYEQHVCAGL DFAGMDRILE KYERYSFAER QLIANEPESP VIKHWALLVN  120
WVLEHSKLKA RIDLLQRNHR HYMGEDLNSM SVKDLQNLEL QLDTALKNIR TRKNQLLFDS  180
ISELQRKEKA IQEQNSMLAK KVXXXXXXXX XLVCCDESGC TKSTYDMIQI KEKEKEMGQW  240
EPSTNTTALP PPPQPQYLMA SQLPCLNIGG GGTYEEASEA TRNELDLTLD SLYSCHLGCF  300
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-16104198397Developmental protein SEPALLATA 3
4ox0_B2e-16104198397Developmental protein SEPALLATA 3
4ox0_C2e-16104198397Developmental protein SEPALLATA 3
4ox0_D2e-16104198397Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547619.11e-107floral homeotic protein APETALA 1
SwissprotQ6E6S75e-95AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A4D9BPT21e-120A0A4D9BPT2_SALSN; MADS-box transcription factor, plant
STRINGMigut.E00037.1.p1e-105(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]