PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100006200011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bZIP
Protein Properties Length: 358aa    MW: 39727.6 Da    PI: 6.6581
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100006200011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.66.2e-092332861063
                                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        bZIP_1  10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                      NR +A rs +RK  +i eLe+kv++L++e ++L  +   l+     l+se+
  Ote100006200011|100006200011 233 IWANRQSAARSKERKMRYITELERKVQTLQTEATSLSAQFTLLQRDTNGLTSEN 286
                                   556***********************************9999999988888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.8E-12222288IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.68E-10231279No hitNo description
CDDcd147039.54E-22232278No hitNo description
PfamPF001708.9E-7232284IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.565232289IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-10235282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMDRSHHGNI LPPSGRYTVF SPPGSSYGAK SEPSSNLPPL GPGSSSEQGH FGHSMPSDSS  60
QFSHDISRMP VNPPKNLGHR RAHSEILTLP DDISFDSDLG VVGGLDGPSL SDDTDDDLLS  120
MYLDMDKFNS TSATSSFQVG ESSNTMATEQ RLPSAPLSEV GPSSNNALSE KPRIRHQHSQ  180
SMDGSTTFKP EMLMDSSEDP SSADAKKAMS AAKLAELALI DPKRAKRVVH ARIWANRQSA  240
ARSKERKMRY ITELERKVQT LQTEATSLSA QFTLLQRDTN GLTSENSELK LRLQTMEQQV  300
HLQDGKIPKL SSIYNYFSAF YFLADFELSI ILAIIKMKSR MSLIYNLEHW PQFLFLEK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091638.11e-172probable transcription factor PosF21
RefseqXP_011091639.11e-172probable transcription factor PosF21
SwissprotQ040881e-117POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A4D8ZK171e-179A0A4D8ZK17_SALSN; Uncharacterized protein
TrEMBLA0A4D8ZN671e-178A0A4D8ZN67_SALSN; Uncharacterized protein
STRINGMigut.G01348.1.p1e-159(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]