PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100005680061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 536aa    MW: 59561.1 Da    PI: 5.1196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100005680061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.12.1e-1011705362374
                          GRAS   2 velLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsek 72 
                                   ++lL  cAe vs+ d+           +a+al++ l++++s +g+p qRl ay++e+L+arl++s+s +yk+l+++e + +
  Ote100005680061|100005680061 170 KQLLCVCAEIVSEADTIslpdrqvaisAAEALMEILEKMVSVSGEPSQRLGAYMLEGLRARLLSSGSIIYKKLKCKEPTIQ 250
                                   68888899988886653333444555599***********************************************99987 PP

                          GRAS  73 n.sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152
                                     sse ++++ +++++ P++kf+++  N  I ea+e+e+r+H+iDf+i qG QW++++qaL+ Rp+gpp +RiTgv++++s
  Ote100005680061|100005680061 251 PtSSELMSYMGVLYQIVPYYKFAYMSSNVIIGEAMENENRIHVIDFQIAQGSQWVSFIQALSRRPGGPPYIRITGVDDSQS 331
                                   746777777778******************************************************************998 PP

                          GRAS 153 g..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                                      +   l+ +g++La++A+++gvpfefn  +a +  +++le+L+  +             r                   
  Ote100005680061|100005680061 332 AhaRGGGLQLVGQKLAQVAQSCGVPFEFNG-AAMSGCQVQLEHLQHYES-----------PRSX---XX----XXXXXXXX 393
                                   8889999***********************.788899999999954432...........2222...11....22355789 PP

                          GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                                   kslsPkvv++veqe+++n+++F +rf+e+l+yy+a+f+s++a  +re+++ri+ E+++++r++vn++aceg er+erhe +
  Ote100005680061|100005680061 394 KSLSPKVVTLVEQESNTNTSTFYQRFCETLDYYTAMFESIDAARSREDRQRISTEEHCVARDVVNIIACEGIERVERHELF 474
                                   *******************************************9************************************* PP

                          GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                   +kWr+rl +aGF++++ls ++ + +k +l++++ + yrv +  +g+l+lgWk+r+L ++SaWr
  Ote100005680061|100005680061 475 GKWRMRLAMAGFSQLQLSPSVGNAIKDMLKEYSPN-YRVADLgNGALYLGWKNRALATTSAWR 536
                                   *********************************55.****87578888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.373143516IPR005202Transcription factor GRAS
PfamPF035147.3E-99170536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MQTSQTSSSF QSFYNQPVQQ IDPYNGSTFQ ILNNDSTGSR RQGTEVSFQT CPEEFFTLES  60
TPATDYATYS SPSAVSVSSN RSPFSPQGSH SYASDLYQPS DNTYGSPLSG SSGVEDENKL  120
LHALWVLRNE LLGPESDTDD SGTFNGVVSQ HSPFTRYNKI LEMAPQMDLK QLLCVCAEIV  180
SEADTISLPD RQVAISAAEA LMEILEKMVS VSGEPSQRLG AYMLEGLRAR LLSSGSIIYK  240
KLKCKEPTIQ PTSSELMSYM GVLYQIVPYY KFAYMSSNVI IGEAMENENR IHVIDFQIAQ  300
GSQWVSFIQA LSRRPGGPPY IRITGVDDSQ SAHARGGGLQ LVGQKLAQVA QSCGVPFEFN  360
GAAMSGCQVQ LEHLQHYESP RSXXXXXXXX XXXKSLSPKV VTLVEQESNT NTSTFYQRFC  420
ETLDYYTAMF ESIDAARSRE DRQRISTEEH CVARDVVNII ACEGIERVER HELFGKWRMR  480
LAMAGFSQLQ LSPSVGNAIK DMLKEYSPNY RVADLGNGAL YLGWKNRALA TTSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4917653526378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095941.10.0scarecrow-like protein 13
SwissprotQ9M0M51e-174SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A4D9B5360.0A0A4D9B536_SALSN; Uncharacterized protein
STRINGMigut.M01421.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111