PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100005370051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 520aa MW: 57572.8 Da PI: 4.8289

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100005370051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.6	1.4e-37	6	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 l+pGfrFhPtd+el+ +yLk+k+ g+k++ ++i+ev+iyk+ PwdLp +kkya+g r +ratk+g Ote100005370051\|100005370051 6 LAPGFRFHPTDDELILYYLKRKIMGRKFHY-DAIAEVNIYKHSPWDLPG-------------MLEKKYASGVRVKRATKNG 72 579************************9.99***********2.............35789********** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkd+++ + +g++vg+ ktL+f+ g+ap+g++t+Wv+hey++ Ote100005370051\|100005370051 73 YWKTTGKDRNISC-NGKTVGTVKTLIFHLGHAPQGKRTNWVIHEYSI 118 *********.999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-49	3	141	IPR003441	NAC domain
PROSITE profile	PS51005	43.615	6	141	IPR003441	NAC domain
Pfam	PF02365	1.1E-19	8	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MVRMSLAPGF RFHPTDDELI LYYLKRKIMG RKFHYDAIAE VNIYKHSPWD LPGMLEKKYA 60 SGVRVKRATK NGYWKTTGKD RNISCNGKTV GTVKTLIFHL GHAPQGKRTN WVIHEYSILD 120 DQLAKAGAQQ DNYVLCRVFE KKGLGPKNGA QYGAPYNEAD WXXXXXXXXX XXXQNNAIPL 180 VVDGPSPTVL MQNEEQHLPL GAGLLISGNE LLPLPEEGTS SSAVVPTSMI AADETTDDEM 240 THLLGLFGHE DMVISNGNGL NQDDLTGNGK EKCSPLEGLD LYDGLGDLEF WTGMEEDIFD 300 FSGVQNVDDS LTKFVPKDNS SYIELDDLLP PLDRTNIVTG THLSSLCQAS ASHSHENSQH 360 LYSDTRFSGM NQYNTFSAND LAVPPYTFDG GDSLAVLQML DRQLYQGSNT SYNFDLPIEQ 420 LENTVYTPHN MMERGSHLEN RNSRYMEFNQ AKLPSAAALL LITRGGSSMH IKAEVTHGAG 480 ECTDEALSVM MGGSSSCWCN LLIQPLLVEG LLYVCSLLLS

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MVRMSLAPGF RFHPTDDELI LYYLKRKIMG RKFHYDAIAE VNIYKHSPWD LPGMLEKKYA  60
SGVRVKRATK NGYWKTTGKD RNISCNGKTV GTVKTLIFHL GHAPQGKRTN WVIHEYSILD  120
DQLAKAGAQQ DNYVLCRVFE KKGLGPKNGA QYGAPYNEAD WXXXXXXXXX XXXQNNAIPL  180
VVDGPSPTVL MQNEEQHLPL GAGLLISGNE LLPLPEEGTS SSAVVPTSMI AADETTDDEM  240
THLLGLFGHE DMVISNGNGL NQDDLTGNGK EKCSPLEGLD LYDGLGDLEF WTGMEEDIFD  300
FSGVQNVDDS LTKFVPKDNS SYIELDDLLP PLDRTNIVTG THLSSLCQAS ASHSHENSQH  360
LYSDTRFSGM NQYNTFSAND LAVPPYTFDG GDSLAVLQML DRQLYQGSNT SYNFDLPIEQ  420
LENTVYTPHN MMERGSHLEN RNSRYMEFNQ AKLPSAAALL LITRGGSSMH IKAEVTHGAG  480
ECTDEALSVM MGGSSSCWCN LLIQPLLVEG LLYVCSLLLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-38	1	142	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-38	1	142	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-38	1	142	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-38	1	142	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-38	1	142	15	169	NAC domain-containing protein 19
3swm_B	2e-38	1	142	15	169	NAC domain-containing protein 19
3swm_C	2e-38	1	142	15	169	NAC domain-containing protein 19
3swm_D	2e-38	1	142	15	169	NAC domain-containing protein 19
3swp_A	2e-38	1	142	15	169	NAC domain-containing protein 19
3swp_B	2e-38	1	142	15	169	NAC domain-containing protein 19
3swp_C	2e-38	1	142	15	169	NAC domain-containing protein 19
3swp_D	2e-38	1	142	15	169	NAC domain-containing protein 19
4dul_A	2e-38	1	142	12	166	NAC domain-containing protein 19
4dul_B	2e-38	1	142	12	166	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099748.1	1e-160	NAC domain-containing protein 82-like isoform X1
TrEMBL	A0A4D9BV25	1e-158	A0A4D9BV25_SALSN; Uncharacterized protein
STRING	Migut.H00727.1.p	1e-145	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6050	23	34